miRNA display CGI


Results 21 - 40 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9143 5' -49.2 NC_002512.2 + 207765 0.66 0.999855
Target:  5'- aGCCgCCGcCGUGGuGGUUgcg--GGACg -3'
miRNA:   3'- -CGG-GGCuGCGCCuCUAAauauaUCUG- -5'
9143 5' -49.2 NC_002512.2 + 4147 0.66 0.999855
Target:  5'- aCCgCCGACGCGaGGAUcgu--UGGACg -3'
miRNA:   3'- cGG-GGCUGCGCcUCUAaauauAUCUG- -5'
9143 5' -49.2 NC_002512.2 + 166788 0.66 0.999855
Target:  5'- cGUCCCgGACGaggacguucUGGAGGUggugGUGGGCg -3'
miRNA:   3'- -CGGGG-CUGC---------GCCUCUAaauaUAUCUG- -5'
9143 5' -49.2 NC_002512.2 + 119349 0.66 0.999855
Target:  5'- uGCUCCGGgccuucuccgccCGCGG-GAUg---GUGGACg -3'
miRNA:   3'- -CGGGGCU------------GCGCCuCUAaauaUAUCUG- -5'
9143 5' -49.2 NC_002512.2 + 97404 0.67 0.999469
Target:  5'- cGCgaCGACGCGGAGGccggggagAGACg -3'
miRNA:   3'- -CGggGCUGCGCCUCUaaauaua-UCUG- -5'
9143 5' -49.2 NC_002512.2 + 4974 0.67 0.999533
Target:  5'- uCCCCG-CGaCGGAGGUg-----AGACg -3'
miRNA:   3'- cGGGGCuGC-GCCUCUAaauauaUCUG- -5'
9143 5' -49.2 NC_002512.2 + 82337 0.67 0.999533
Target:  5'- cGCCCCGGCG-GGuAGcg----GUGGGCg -3'
miRNA:   3'- -CGGGGCUGCgCC-UCuaaauaUAUCUG- -5'
9143 5' -49.2 NC_002512.2 + 27992 0.67 0.999533
Target:  5'- aUUCCGGCGCGGGGAgacgg--AGAa -3'
miRNA:   3'- cGGGGCUGCGCCUCUaaauauaUCUg -5'
9143 5' -49.2 NC_002512.2 + 11683 0.67 0.999513
Target:  5'- cGgCCCGAgGCGGGGGcccgag-GGGCg -3'
miRNA:   3'- -CgGGGCUgCGCCUCUaaauauaUCUG- -5'
9143 5' -49.2 NC_002512.2 + 38447 0.67 0.999543
Target:  5'- cGCCCCGG-GCGGAGugaacau--GACu -3'
miRNA:   3'- -CGGGGCUgCGCCUCuaaauauauCUG- -5'
9143 5' -49.2 NC_002512.2 + 131774 0.67 0.999094
Target:  5'- cGCCCCGGCaaGCGGGGcggga---AGGCg -3'
miRNA:   3'- -CGGGGCUG--CGCCUCuaaauauaUCUG- -5'
9143 5' -49.2 NC_002512.2 + 130245 0.67 0.999533
Target:  5'- gGCCCCGGCGUgcuuGGuGAgg-AUcaGGGCg -3'
miRNA:   3'- -CGGGGCUGCG----CCuCUaaaUAuaUCUG- -5'
9143 5' -49.2 NC_002512.2 + 113719 0.67 0.999533
Target:  5'- gGUCCCGACGCGGGcggcGAUc--UGcGGGCc -3'
miRNA:   3'- -CGGGGCUGCGCCU----CUAaauAUaUCUG- -5'
9143 5' -49.2 NC_002512.2 + 55993 0.67 0.999533
Target:  5'- uGUCCCGACGUaucaaGGGGGUcgUUAUuc-GACg -3'
miRNA:   3'- -CGGGGCUGCG-----CCUCUA--AAUAuauCUG- -5'
9143 5' -49.2 NC_002512.2 + 131521 0.67 0.999513
Target:  5'- cCCCaCGACGcCGGAGGgagacg-AGGCg -3'
miRNA:   3'- cGGG-GCUGC-GCCUCUaaauauaUCUG- -5'
9143 5' -49.2 NC_002512.2 + 221585 0.67 0.999533
Target:  5'- uGCUCCGuCGaccCGGAGGggggUcgGUGGACg -3'
miRNA:   3'- -CGGGGCuGC---GCCUCUaa--AuaUAUCUG- -5'
9143 5' -49.2 NC_002512.2 + 139273 0.67 0.998855
Target:  5'- cGCCCgGcGCGCGGGGGcgaagggGGGCg -3'
miRNA:   3'- -CGGGgC-UGCGCCUCUaaauauaUCUG- -5'
9143 5' -49.2 NC_002512.2 + 30874 0.67 0.99894
Target:  5'- uUCCUGACGCaGGAGGcc-AUcgAGACg -3'
miRNA:   3'- cGGGGCUGCG-CCUCUaaaUAuaUCUG- -5'
9143 5' -49.2 NC_002512.2 + 101513 0.67 0.999039
Target:  5'- cGCCgCCGGCGaCGGGGAgggcgagggggaaggAGACg -3'
miRNA:   3'- -CGG-GGCUGC-GCCUCUaaauaua--------UCUG- -5'
9143 5' -49.2 NC_002512.2 + 77189 0.67 0.999057
Target:  5'- aCCCCGAC-CGGGGAcgcgacgAGACc -3'
miRNA:   3'- cGGGGCUGcGCCUCUaaauauaUCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.