Results 1 - 20 of 88 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9143 | 5' | -49.2 | NC_002512.2 | + | 227981 | 0.69 | 0.995057 |
Target: 5'- gGCCCCGGCGCcGAGGgccga--GGGCc -3' miRNA: 3'- -CGGGGCUGCGcCUCUaaauauaUCUG- -5' |
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9143 | 5' | -49.2 | NC_002512.2 | + | 226759 | 0.7 | 0.992385 |
Target: 5'- gGCCggaCGACGCGGAGGgcga---GGACg -3' miRNA: 3'- -CGGg--GCUGCGCCUCUaaauauaUCUG- -5' |
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9143 | 5' | -49.2 | NC_002512.2 | + | 221585 | 0.67 | 0.999533 |
Target: 5'- uGCUCCGuCGaccCGGAGGggggUcgGUGGACg -3' miRNA: 3'- -CGGGGCuGC---GCCUCUaa--AuaUAUCUG- -5' |
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9143 | 5' | -49.2 | NC_002512.2 | + | 219051 | 0.67 | 0.999303 |
Target: 5'- gGCCgCGGCGCGGGGcuccccgcGGGCu -3' miRNA: 3'- -CGGgGCUGCGCCUCuaaauauaUCUG- -5' |
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9143 | 5' | -49.2 | NC_002512.2 | + | 217865 | 0.67 | 0.999146 |
Target: 5'- -gCCCGGCGUGGGGAgcgcguccgAGAUc -3' miRNA: 3'- cgGGGCUGCGCCUCUaaauaua--UCUG- -5' |
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9143 | 5' | -49.2 | NC_002512.2 | + | 216329 | 0.66 | 0.999634 |
Target: 5'- gGCCCCGACGCGGucggc------GGCu -3' miRNA: 3'- -CGGGGCUGCGCCucuaaauauauCUG- -5' |
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9143 | 5' | -49.2 | NC_002512.2 | + | 207912 | 0.67 | 0.99902 |
Target: 5'- uCCUCGACGCGGAGcucgaac-GGGCc -3' miRNA: 3'- cGGGGCUGCGCCUCuaaauauaUCUG- -5' |
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9143 | 5' | -49.2 | NC_002512.2 | + | 207765 | 0.66 | 0.999855 |
Target: 5'- aGCCgCCGcCGUGGuGGUUgcg--GGACg -3' miRNA: 3'- -CGG-GGCuGCGCCuCUAAauauaUCUG- -5' |
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9143 | 5' | -49.2 | NC_002512.2 | + | 197184 | 0.7 | 0.992385 |
Target: 5'- uCUCCGACGCGGAcaacUAUGUcGACa -3' miRNA: 3'- cGGGGCUGCGCCUcuaaAUAUAuCUG- -5' |
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9143 | 5' | -49.2 | NC_002512.2 | + | 196214 | 0.66 | 0.99974 |
Target: 5'- aGCCuCCGGCGCGuGAGccucug--AGACc -3' miRNA: 3'- -CGG-GGCUGCGC-CUCuaaauauaUCUG- -5' |
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9143 | 5' | -49.2 | NC_002512.2 | + | 185417 | 0.66 | 0.999626 |
Target: 5'- gGCCCCGggGCGCccuGGAGGUcu-UcgAGGCc -3' miRNA: 3'- -CGGGGC--UGCG---CCUCUAaauAuaUCUG- -5' |
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9143 | 5' | -49.2 | NC_002512.2 | + | 166788 | 0.66 | 0.999855 |
Target: 5'- cGUCCCgGACGaggacguucUGGAGGUggugGUGGGCg -3' miRNA: 3'- -CGGGG-CUGC---------GCCUCUAaauaUAUCUG- -5' |
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9143 | 5' | -49.2 | NC_002512.2 | + | 162123 | 0.67 | 0.999469 |
Target: 5'- aCCCCGGCGCcGGAGAcgacccc-GGCu -3' miRNA: 3'- cGGGGCUGCG-CCUCUaaauauauCUG- -5' |
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9143 | 5' | -49.2 | NC_002512.2 | + | 161000 | 0.69 | 0.996428 |
Target: 5'- cGCCCCGGCGagGGGGAUgaauuucgcguUGGAg -3' miRNA: 3'- -CGGGGCUGCg-CCUCUAaauau------AUCUg -5' |
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9143 | 5' | -49.2 | NC_002512.2 | + | 159878 | 0.67 | 0.999289 |
Target: 5'- -aCCgGACGCaGGGGGUggaggUGUGUcGACg -3' miRNA: 3'- cgGGgCUGCG-CCUCUAa----AUAUAuCUG- -5' |
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9143 | 5' | -49.2 | NC_002512.2 | + | 158836 | 0.67 | 0.998855 |
Target: 5'- gGUgCUGACGCGGGGGagcggggGGACg -3' miRNA: 3'- -CGgGGCUGCGCCUCUaaauauaUCUG- -5' |
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9143 | 5' | -49.2 | NC_002512.2 | + | 158693 | 0.68 | 0.997794 |
Target: 5'- gGCCggGACGgGGAGGUgcccgagGUGGACg -3' miRNA: 3'- -CGGggCUGCgCCUCUAaaua---UAUCUG- -5' |
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9143 | 5' | -49.2 | NC_002512.2 | + | 154337 | 0.68 | 0.997794 |
Target: 5'- cGCCCCGGCgagcccGCGGAuuUUUuug-GGACa -3' miRNA: 3'- -CGGGGCUG------CGCCUcuAAAuauaUCUG- -5' |
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9143 | 5' | -49.2 | NC_002512.2 | + | 149542 | 0.66 | 0.999764 |
Target: 5'- cGUCCagaGACuggaGUGGAGGcccuuugUUAUAUAGACa -3' miRNA: 3'- -CGGGg--CUG----CGCCUCUa------AAUAUAUCUG- -5' |
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9143 | 5' | -49.2 | NC_002512.2 | + | 148474 | 0.66 | 0.999695 |
Target: 5'- aGCCgCGACgGCGGGGA-------GGACg -3' miRNA: 3'- -CGGgGCUG-CGCCUCUaaauauaUCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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