miRNA display CGI


Results 41 - 60 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9143 5' -49.2 NC_002512.2 + 217865 0.67 0.999146
Target:  5'- -gCCCGGCGUGGGGAgcgcguccgAGAUc -3'
miRNA:   3'- cgGGGCUGCGCCUCUaaauaua--UCUG- -5'
9143 5' -49.2 NC_002512.2 + 131774 0.67 0.999094
Target:  5'- cGCCCCGGCaaGCGGGGcggga---AGGCg -3'
miRNA:   3'- -CGGGGCUG--CGCCUCuaaauauaUCUG- -5'
9143 5' -49.2 NC_002512.2 + 77189 0.67 0.999057
Target:  5'- aCCCCGAC-CGGGGAcgcgacgAGACc -3'
miRNA:   3'- cGGGGCUGcGCCUCUaaauauaUCUG- -5'
9143 5' -49.2 NC_002512.2 + 101513 0.67 0.999039
Target:  5'- cGCCgCCGGCGaCGGGGAgggcgagggggaaggAGACg -3'
miRNA:   3'- -CGG-GGCUGC-GCCUCUaaauaua--------UCUG- -5'
9143 5' -49.2 NC_002512.2 + 207912 0.67 0.99902
Target:  5'- uCCUCGACGCGGAGcucgaac-GGGCc -3'
miRNA:   3'- cGGGGCUGCGCCUCuaaauauaUCUG- -5'
9143 5' -49.2 NC_002512.2 + 30874 0.67 0.99894
Target:  5'- uUCCUGACGCaGGAGGcc-AUcgAGACg -3'
miRNA:   3'- cGGGGCUGCG-CCUCUaaaUAuaUCUG- -5'
9143 5' -49.2 NC_002512.2 + 158836 0.67 0.998855
Target:  5'- gGUgCUGACGCGGGGGagcggggGGACg -3'
miRNA:   3'- -CGgGGCUGCGCCUCUaaauauaUCUG- -5'
9143 5' -49.2 NC_002512.2 + 139273 0.67 0.998855
Target:  5'- cGCCCgGcGCGCGGGGGcgaagggGGGCg -3'
miRNA:   3'- -CGGGgC-UGCGCCUCUaaauauaUCUG- -5'
9143 5' -49.2 NC_002512.2 + 12706 0.68 0.998717
Target:  5'- -aCCUGGCGCGGAGGgcgAUGaacccGACg -3'
miRNA:   3'- cgGGGCUGCGCCUCUaaaUAUau---CUG- -5'
9143 5' -49.2 NC_002512.2 + 87703 0.68 0.998617
Target:  5'- cGCggCGACGCGGAGAcgccgcgAGACg -3'
miRNA:   3'- -CGggGCUGCGCCUCUaaauauaUCUG- -5'
9143 5' -49.2 NC_002512.2 + 14835 0.68 0.998565
Target:  5'- cGCCgCCGACGaCGGuGAgcuccucgGGACa -3'
miRNA:   3'- -CGG-GGCUGC-GCCuCUaaauaua-UCUG- -5'
9143 5' -49.2 NC_002512.2 + 121067 0.68 0.998455
Target:  5'- cGCCCgaGGCGCGGAGGaagc---GGACc -3'
miRNA:   3'- -CGGGg-CUGCGCCUCUaaauauaUCUG- -5'
9143 5' -49.2 NC_002512.2 + 141610 0.68 0.998455
Target:  5'- uGCagaCCGugGCGGucGAUUUcgGggAGACg -3'
miRNA:   3'- -CGg--GGCugCGCCu-CUAAAuaUa-UCUG- -5'
9143 5' -49.2 NC_002512.2 + 63273 0.68 0.998397
Target:  5'- uCCCgGACGCGGAGcccug---GGACc -3'
miRNA:   3'- cGGGgCUGCGCCUCuaaauauaUCUG- -5'
9143 5' -49.2 NC_002512.2 + 154337 0.68 0.997794
Target:  5'- cGCCCCGGCgagcccGCGGAuuUUUuug-GGACa -3'
miRNA:   3'- -CGGGGCUG------CGCCUcuAAAuauaUCUG- -5'
9143 5' -49.2 NC_002512.2 + 4244 0.68 0.997794
Target:  5'- aGCCCCGACG-GGuGGUUcggg-GGAUa -3'
miRNA:   3'- -CGGGGCUGCgCCuCUAAauauaUCUG- -5'
9143 5' -49.2 NC_002512.2 + 158693 0.68 0.997794
Target:  5'- gGCCggGACGgGGAGGUgcccgagGUGGACg -3'
miRNA:   3'- -CGGggCUGCgCCUCUAaaua---UAUCUG- -5'
9143 5' -49.2 NC_002512.2 + 121215 0.68 0.997339
Target:  5'- cGCCCucgucguCGGCGgGGAGuac-AUGUGGACc -3'
miRNA:   3'- -CGGG-------GCUGCgCCUCuaaaUAUAUCUG- -5'
9143 5' -49.2 NC_002512.2 + 86116 0.68 0.997202
Target:  5'- aCCCgGGCGCGGAGGaggucgcGGACc -3'
miRNA:   3'- cGGGgCUGCGCCUCUaaauauaUCUG- -5'
9143 5' -49.2 NC_002512.2 + 26220 0.69 0.996911
Target:  5'- aCCgUGGCGaCGGAGAcgggaccgGUAUGGACg -3'
miRNA:   3'- cGGgGCUGC-GCCUCUaaa-----UAUAUCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.