miRNA display CGI


Results 21 - 40 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9143 5' -49.2 NC_002512.2 + 50867 0.66 0.999626
Target:  5'- -aCCCGACGuCGGAGAa------GGACa -3'
miRNA:   3'- cgGGGCUGC-GCCUCUaaauauaUCUG- -5'
9143 5' -49.2 NC_002512.2 + 56365 0.66 0.999626
Target:  5'- gGCCCCGACggacggaucgGCGGAcggcggggcGAg--GUcgAGACa -3'
miRNA:   3'- -CGGGGCUG----------CGCCU---------CUaaaUAuaUCUG- -5'
9143 5' -49.2 NC_002512.2 + 44482 0.66 0.999617
Target:  5'- cGCCCCGGggccggGCGGAGA-------AGACg -3'
miRNA:   3'- -CGGGGCUg-----CGCCUCUaaauauaUCUG- -5'
9143 5' -49.2 NC_002512.2 + 11395 0.66 0.999609
Target:  5'- gGCUCgGACGCGGAcGAcccgcg-GGACg -3'
miRNA:   3'- -CGGGgCUGCGCCU-CUaaauauaUCUG- -5'
9143 5' -49.2 NC_002512.2 + 38447 0.67 0.999543
Target:  5'- cGCCCCGG-GCGGAGugaacau--GACu -3'
miRNA:   3'- -CGGGGCUgCGCCUCuaaauauauCUG- -5'
9143 5' -49.2 NC_002512.2 + 27992 0.67 0.999533
Target:  5'- aUUCCGGCGCGGGGAgacgg--AGAa -3'
miRNA:   3'- cGGGGCUGCGCCUCUaaauauaUCUg -5'
9143 5' -49.2 NC_002512.2 + 4974 0.67 0.999533
Target:  5'- uCCCCG-CGaCGGAGGUg-----AGACg -3'
miRNA:   3'- cGGGGCuGC-GCCUCUAaauauaUCUG- -5'
9143 5' -49.2 NC_002512.2 + 130245 0.67 0.999533
Target:  5'- gGCCCCGGCGUgcuuGGuGAgg-AUcaGGGCg -3'
miRNA:   3'- -CGGGGCUGCG----CCuCUaaaUAuaUCUG- -5'
9143 5' -49.2 NC_002512.2 + 55993 0.67 0.999533
Target:  5'- uGUCCCGACGUaucaaGGGGGUcgUUAUuc-GACg -3'
miRNA:   3'- -CGGGGCUGCG-----CCUCUA--AAUAuauCUG- -5'
9143 5' -49.2 NC_002512.2 + 113719 0.67 0.999533
Target:  5'- gGUCCCGACGCGGGcggcGAUc--UGcGGGCc -3'
miRNA:   3'- -CGGGGCUGCGCCU----CUAaauAUaUCUG- -5'
9143 5' -49.2 NC_002512.2 + 221585 0.67 0.999533
Target:  5'- uGCUCCGuCGaccCGGAGGggggUcgGUGGACg -3'
miRNA:   3'- -CGGGGCuGC---GCCUCUaa--AuaUAUCUG- -5'
9143 5' -49.2 NC_002512.2 + 82337 0.67 0.999533
Target:  5'- cGCCCCGGCG-GGuAGcg----GUGGGCg -3'
miRNA:   3'- -CGGGGCUGCgCC-UCuaaauaUAUCUG- -5'
9143 5' -49.2 NC_002512.2 + 131521 0.67 0.999513
Target:  5'- cCCCaCGACGcCGGAGGgagacg-AGGCg -3'
miRNA:   3'- cGGG-GCUGC-GCCUCUaaauauaUCUG- -5'
9143 5' -49.2 NC_002512.2 + 11683 0.67 0.999513
Target:  5'- cGgCCCGAgGCGGGGGcccgag-GGGCg -3'
miRNA:   3'- -CgGGGCUgCGCCUCUaaauauaUCUG- -5'
9143 5' -49.2 NC_002512.2 + 162123 0.67 0.999469
Target:  5'- aCCCCGGCGCcGGAGAcgacccc-GGCu -3'
miRNA:   3'- cGGGGCUGCG-CCUCUaaauauauCUG- -5'
9143 5' -49.2 NC_002512.2 + 97404 0.67 0.999469
Target:  5'- cGCgaCGACGCGGAGGccggggagAGACg -3'
miRNA:   3'- -CGggGCUGCGCCUCUaaauaua-UCUG- -5'
9143 5' -49.2 NC_002512.2 + 93717 0.67 0.999422
Target:  5'- aCCCCGccGCGCGGcGGAUcgacggGGACg -3'
miRNA:   3'- cGGGGC--UGCGCC-UCUAaauauaUCUG- -5'
9143 5' -49.2 NC_002512.2 + 219051 0.67 0.999303
Target:  5'- gGCCgCGGCGCGGGGcuccccgcGGGCu -3'
miRNA:   3'- -CGGgGCUGCGCCUCuaaauauaUCUG- -5'
9143 5' -49.2 NC_002512.2 + 159878 0.67 0.999289
Target:  5'- -aCCgGACGCaGGGGGUggaggUGUGUcGACg -3'
miRNA:   3'- cgGGgCUGCG-CCUCUAa----AUAUAuCUG- -5'
9143 5' -49.2 NC_002512.2 + 99262 0.67 0.999244
Target:  5'- cGCCCCGAggacgccggaCGCGGGGucgagcaggAGGCc -3'
miRNA:   3'- -CGGGGCU----------GCGCCUCuaaauaua-UCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.