miRNA display CGI


Results 1 - 20 of 320 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9148 3' -44.3 NC_002512.2 + 88986 0.67 1
Target:  5'- cGGcuucguGGcCGGGGGGccGACGGAAGAGu -3'
miRNA:   3'- uCCuu----UC-GUCUCCUuuUUGCCUUUUC- -5'
9148 3' -44.3 NC_002512.2 + 156569 0.67 1
Target:  5'- gAGcGGAAGCGGAGaccgucaggguauguGAu--GCGGAAAGGu -3'
miRNA:   3'- -UC-CUUUCGUCUC---------------CUuuuUGCCUUUUC- -5'
9148 3' -44.3 NC_002512.2 + 33327 0.67 1
Target:  5'- cGGccAGgAGAGGggGAGCaGGGAGc- -3'
miRNA:   3'- uCCuuUCgUCUCCuuUUUG-CCUUUuc -5'
9148 3' -44.3 NC_002512.2 + 24535 0.66 1
Target:  5'- cGGucagcGAGCGG-GGAcgGAgGGGAGAGa -3'
miRNA:   3'- uCCu----UUCGUCuCCUuuUUgCCUUUUC- -5'
9148 3' -44.3 NC_002512.2 + 226074 0.67 1
Target:  5'- cGGGGAcGUAGGGGAc-GGCuGAGGAGg -3'
miRNA:   3'- -UCCUUuCGUCUCCUuuUUGcCUUUUC- -5'
9148 3' -44.3 NC_002512.2 + 103922 0.67 1
Target:  5'- cGGGAAccgaGGguGugucgucGAGGGGCGGAAGAGg -3'
miRNA:   3'- -UCCUU----UCguCuc-----CUUUUUGCCUUUUC- -5'
9148 3' -44.3 NC_002512.2 + 148873 0.67 1
Target:  5'- cGGGAucGAGguGcaagguuGGGucuAAGGCGGGAAGGg -3'
miRNA:   3'- -UCCU--UUCguC-------UCCu--UUUUGCCUUUUC- -5'
9148 3' -44.3 NC_002512.2 + 131040 0.67 1
Target:  5'- cGGGGccGCGG-GGGAGGACGGc---- -3'
miRNA:   3'- -UCCUuuCGUCuCCUUUUUGCCuuuuc -5'
9148 3' -44.3 NC_002512.2 + 188011 0.67 1
Target:  5'- uGGccGGAGCGG-GGAugauacauGAGACGGAAAAu -3'
miRNA:   3'- uCC--UUUCGUCuCCU--------UUUUGCCUUUUc -5'
9148 3' -44.3 NC_002512.2 + 127288 0.67 1
Target:  5'- cGGAcGGC-GAGGAGAGGaGGAAAc- -3'
miRNA:   3'- uCCUuUCGuCUCCUUUUUgCCUUUuc -5'
9148 3' -44.3 NC_002512.2 + 28340 0.66 1
Target:  5'- -----cGCGGAGGAgcgGAAGCGGAu--- -3'
miRNA:   3'- uccuuuCGUCUCCU---UUUUGCCUuuuc -5'
9148 3' -44.3 NC_002512.2 + 226830 0.66 1
Target:  5'- uGGGGAGCGGAagccauuagccGGGuggcgaacGAGCGGAAAGa -3'
miRNA:   3'- uCCUUUCGUCU-----------CCUu-------UUUGCCUUUUc -5'
9148 3' -44.3 NC_002512.2 + 85563 0.67 1
Target:  5'- gAGGAGGcGCGGgagcGGGAGcgGcCGGGAGAGc -3'
miRNA:   3'- -UCCUUU-CGUC----UCCUUuuU-GCCUUUUC- -5'
9148 3' -44.3 NC_002512.2 + 27626 0.67 1
Target:  5'- cGGAGagacgcuccgGGCGcGAGGcGGAAACGGGAGGu -3'
miRNA:   3'- uCCUU----------UCGU-CUCC-UUUUUGCCUUUUc -5'
9148 3' -44.3 NC_002512.2 + 228502 0.66 1
Target:  5'- uGGGAAAcGCAGGcGGAGAccgUGGAAGGa -3'
miRNA:   3'- -UCCUUU-CGUCU-CCUUUuu-GCCUUUUc -5'
9148 3' -44.3 NC_002512.2 + 5006 0.67 1
Target:  5'- -cGAAGGCGGccGGcGAGGCGGGAAAc -3'
miRNA:   3'- ucCUUUCGUCu-CCuUUUUGCCUUUUc -5'
9148 3' -44.3 NC_002512.2 + 37148 0.67 1
Target:  5'- cAGGAAGGCc-AGGAcgacGAAggccacgacggcgGCGGAGAAGu -3'
miRNA:   3'- -UCCUUUCGucUCCU----UUU-------------UGCCUUUUC- -5'
9148 3' -44.3 NC_002512.2 + 3794 0.66 1
Target:  5'- cGGAccgGAGCAGucccGAGAgcgagccgucGACGGAAGAGu -3'
miRNA:   3'- uCCU---UUCGUCuc--CUUU----------UUGCCUUUUC- -5'
9148 3' -44.3 NC_002512.2 + 40787 0.67 1
Target:  5'- cGGGcGAG-AGAGGAGGAucggacgucGCGGAGAc- -3'
miRNA:   3'- -UCCuUUCgUCUCCUUUU---------UGCCUUUuc -5'
9148 3' -44.3 NC_002512.2 + 170825 0.67 1
Target:  5'- -cGggGGCuGAaGAAGGACGGAGAc- -3'
miRNA:   3'- ucCuuUCGuCUcCUUUUUGCCUUUuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.