miRNA display CGI


Results 1 - 20 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9149 5' -53.1 NC_002512.2 + 105271 0.66 0.993129
Target:  5'- gGCcAGCGACauCUCgGCGUCcgGGAUGUCc -3'
miRNA:   3'- gCGuUCGCUG--GAGgUGUAG--CUUGCAG- -5'
9149 5' -53.1 NC_002512.2 + 48873 0.66 0.993129
Target:  5'- aCGCGGGCcucCCUCUACA-CGAACa-- -3'
miRNA:   3'- -GCGUUCGcu-GGAGGUGUaGCUUGcag -5'
9149 5' -53.1 NC_002512.2 + 83023 0.66 0.993129
Target:  5'- gCGguAGUGGCC-CCGCG-CGAGC-UCg -3'
miRNA:   3'- -GCguUCGCUGGaGGUGUaGCUUGcAG- -5'
9149 5' -53.1 NC_002512.2 + 3188 0.66 0.993129
Target:  5'- uCGCGu-CGACgUCguCGUCGAACGUg -3'
miRNA:   3'- -GCGUucGCUGgAGguGUAGCUUGCAg -5'
9149 5' -53.1 NC_002512.2 + 212361 0.66 0.993129
Target:  5'- aGCGAGCuGGCCgcCUACGcCGAcgccgACGUCg -3'
miRNA:   3'- gCGUUCG-CUGGa-GGUGUaGCU-----UGCAG- -5'
9149 5' -53.1 NC_002512.2 + 189015 0.66 0.993129
Target:  5'- cCGCGGGCGACCcUCCccuCcgUGucUGUCg -3'
miRNA:   3'- -GCGUUCGCUGG-AGGu--GuaGCuuGCAG- -5'
9149 5' -53.1 NC_002512.2 + 154373 0.66 0.993129
Target:  5'- ---uGGCGGCUUCCGCggCGAAaGUCc -3'
miRNA:   3'- gcguUCGCUGGAGGUGuaGCUUgCAG- -5'
9149 5' -53.1 NC_002512.2 + 119446 0.66 0.993129
Target:  5'- gGUgcGCGuCCUCCGCcucuagAUCGGGCGg- -3'
miRNA:   3'- gCGuuCGCuGGAGGUG------UAGCUUGCag -5'
9149 5' -53.1 NC_002512.2 + 134132 0.66 0.993129
Target:  5'- -cCAGGCGGCCgUCGCggCGcGCGUCc -3'
miRNA:   3'- gcGUUCGCUGGaGGUGuaGCuUGCAG- -5'
9149 5' -53.1 NC_002512.2 + 138421 0.66 0.993129
Target:  5'- aGCAcuCGAUCUCCcCGUUGGACuUCa -3'
miRNA:   3'- gCGUucGCUGGAGGuGUAGCUUGcAG- -5'
9149 5' -53.1 NC_002512.2 + 91630 0.66 0.993129
Target:  5'- cCGCGGG-GAUCUCCAgCGgguUCG-GCGUCg -3'
miRNA:   3'- -GCGUUCgCUGGAGGU-GU---AGCuUGCAG- -5'
9149 5' -53.1 NC_002512.2 + 177257 0.66 0.993129
Target:  5'- uGCAAGCGACC-CCGauuUCuGAAUGa- -3'
miRNA:   3'- gCGUUCGCUGGaGGUgu-AG-CUUGCag -5'
9149 5' -53.1 NC_002512.2 + 5264 0.66 0.993129
Target:  5'- cCGCGgcGGCGACC-CCGagcccgGUCGGcaccGCGUCc -3'
miRNA:   3'- -GCGU--UCGCUGGaGGUg-----UAGCU----UGCAG- -5'
9149 5' -53.1 NC_002512.2 + 77623 0.66 0.993129
Target:  5'- aCGaCGAGCGACgaCuCGCuGUCGAGCGa- -3'
miRNA:   3'- -GC-GUUCGCUGgaG-GUG-UAGCUUGCag -5'
9149 5' -53.1 NC_002512.2 + 8204 0.66 0.992545
Target:  5'- nCGcCGGGCGGgUgUCCGCGucccagacguaggccUCGAGCGUCg -3'
miRNA:   3'- -GC-GUUCGCUgG-AGGUGU---------------AGCUUGCAG- -5'
9149 5' -53.1 NC_002512.2 + 17494 0.66 0.992134
Target:  5'- uCGUcGGCcGCCUCCucgaucucgACGUCG-GCGUCg -3'
miRNA:   3'- -GCGuUCGcUGGAGG---------UGUAGCuUGCAG- -5'
9149 5' -53.1 NC_002512.2 + 29790 0.66 0.992134
Target:  5'- aGUAccccGGCGACC-CCGCGaCGGGCG-Cg -3'
miRNA:   3'- gCGU----UCGCUGGaGGUGUaGCUUGCaG- -5'
9149 5' -53.1 NC_002512.2 + 52876 0.66 0.992134
Target:  5'- gCGCAGGCGGCCcugacgCCACGaaguacaUGGACGcCu -3'
miRNA:   3'- -GCGUUCGCUGGa-----GGUGUa------GCUUGCaG- -5'
9149 5' -53.1 NC_002512.2 + 98013 0.66 0.992134
Target:  5'- uGCuGGUGGCCgUCCugAUCcgccgcGGCGUCa -3'
miRNA:   3'- gCGuUCGCUGG-AGGugUAGc-----UUGCAG- -5'
9149 5' -53.1 NC_002512.2 + 155550 0.66 0.992134
Target:  5'- uCGUggGCG-CC-CUACGUCGGACu-- -3'
miRNA:   3'- -GCGuuCGCuGGaGGUGUAGCUUGcag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.