miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9150 5' -56.1 NC_002512.2 + 125197 0.71 0.80355
Target:  5'- gACGAGaC-UCCGGUCGCGcgugucgucgucgGUCCGGu -3'
miRNA:   3'- gUGCUCaGuAGGCCAGCGCa------------CAGGCU- -5'
9150 5' -56.1 NC_002512.2 + 154331 0.66 0.968972
Target:  5'- --gGAGUCGUCCGcGUCGUc-GUCCu- -3'
miRNA:   3'- gugCUCAGUAGGC-CAGCGcaCAGGcu -5'
9150 5' -56.1 NC_002512.2 + 116871 0.66 0.968972
Target:  5'- uCGCGAGUC-UgUGGUCGCGg--CUGGc -3'
miRNA:   3'- -GUGCUCAGuAgGCCAGCGCacaGGCU- -5'
9150 5' -56.1 NC_002512.2 + 222504 0.67 0.952116
Target:  5'- aCGCGAucGUCGUCCGGa-GCGUuUCCa- -3'
miRNA:   3'- -GUGCU--CAGUAGGCCagCGCAcAGGcu -5'
9150 5' -56.1 NC_002512.2 + 104080 0.67 0.952116
Target:  5'- -cCGucGUcCGUCCGGUCGCcGUGguugCCGGu -3'
miRNA:   3'- guGCu-CA-GUAGGCCAGCG-CACa---GGCU- -5'
9150 5' -56.1 NC_002512.2 + 163444 0.67 0.952116
Target:  5'- uGCGAGgcggagAUCCGGUC-CGUGUCUu- -3'
miRNA:   3'- gUGCUCag----UAGGCCAGcGCACAGGcu -5'
9150 5' -56.1 NC_002512.2 + 194640 0.67 0.947715
Target:  5'- aCACGGGgcaccCGUCCgaGGUCGaCGgaugaucUGUCCGAg -3'
miRNA:   3'- -GUGCUCa----GUAGG--CCAGC-GC-------ACAGGCU- -5'
9150 5' -56.1 NC_002512.2 + 142243 0.67 0.943922
Target:  5'- aCGCGGGaUCuccgaucugggAUCCGGUCGUc-GUCCGGg -3'
miRNA:   3'- -GUGCUC-AG-----------UAGGCCAGCGcaCAGGCU- -5'
9150 5' -56.1 NC_002512.2 + 5843 0.67 0.936744
Target:  5'- gACGAGUCGUCCccggcggccccgucgGaGUCccggGCGUcGUCCGAc -3'
miRNA:   3'- gUGCUCAGUAGG---------------C-CAG----CGCA-CAGGCU- -5'
9150 5' -56.1 NC_002512.2 + 114278 0.67 0.930003
Target:  5'- aGCGGGUCcgCCGcGUC-CGUGUUCu- -3'
miRNA:   3'- gUGCUCAGuaGGC-CAGcGCACAGGcu -5'
9150 5' -56.1 NC_002512.2 + 139807 0.68 0.924925
Target:  5'- gGCGGGggccUCGGUCGgGUGUCCa- -3'
miRNA:   3'- gUGCUCaguaGGCCAGCgCACAGGcu -5'
9150 5' -56.1 NC_002512.2 + 127010 0.68 0.908372
Target:  5'- --gGAGUCgGUCCGGgCGCGUuucUCCGAc -3'
miRNA:   3'- gugCUCAG-UAGGCCaGCGCAc--AGGCU- -5'
9150 5' -56.1 NC_002512.2 + 157740 0.69 0.876489
Target:  5'- aACGuGUCGUCCGGUgUGUGUGUacaGAu -3'
miRNA:   3'- gUGCuCAGUAGGCCA-GCGCACAgg-CU- -5'
9150 5' -56.1 NC_002512.2 + 98940 0.7 0.847356
Target:  5'- gGCG-GUCGUCCGccucgagcucaGUCG-GUGUCCGGg -3'
miRNA:   3'- gUGCuCAGUAGGC-----------CAGCgCACAGGCU- -5'
9150 5' -56.1 NC_002512.2 + 115503 0.7 0.847356
Target:  5'- gGCGGGUCG-CCGGUCuccaggGCcggGUCCGAa -3'
miRNA:   3'- gUGCUCAGUaGGCCAG------CGca-CAGGCU- -5'
9150 5' -56.1 NC_002512.2 + 103354 0.7 0.847356
Target:  5'- gACGAGUCcggggCCgcGGUCGgGUcGUCCGAc -3'
miRNA:   3'- gUGCUCAGua---GG--CCAGCgCA-CAGGCU- -5'
9150 5' -56.1 NC_002512.2 + 95194 0.72 0.725711
Target:  5'- cCGCGAGaggaCGUCCgcGGUCGCGcGUCCGu -3'
miRNA:   3'- -GUGCUCa---GUAGG--CCAGCGCaCAGGCu -5'
9150 5' -56.1 NC_002512.2 + 208132 0.66 0.968972
Target:  5'- uGCGAGUUcaGUCCgcagaucggagcGGUcCGCGcgGUCCGGu -3'
miRNA:   3'- gUGCUCAG--UAGG------------CCA-GCGCa-CAGGCU- -5'
9150 5' -56.1 NC_002512.2 + 211891 0.66 0.962833
Target:  5'- aGCGGGUCAccuUCCGGggcugcCGCGUcgUCGAg -3'
miRNA:   3'- gUGCUCAGU---AGGCCa-----GCGCAcaGGCU- -5'
9150 5' -56.1 NC_002512.2 + 72379 0.66 0.962833
Target:  5'- gAUGA-UCGUCUGGUCGCgGUGgacgCUGAu -3'
miRNA:   3'- gUGCUcAGUAGGCCAGCG-CACa---GGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.