miRNA display CGI


Results 1 - 20 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9151 3' -58.2 NC_002512.2 + 95511 0.66 0.919192
Target:  5'- ---gACGUcccggaccucgaacaGCUCGugGaCGGUGCGGg -3'
miRNA:   3'- cucaUGCA---------------CGAGCugCgGCCACGCCg -5'
9151 3' -58.2 NC_002512.2 + 71315 0.66 0.917018
Target:  5'- -cGUACGUGacgcugUCG-CGCCaGGaGCGGCc -3'
miRNA:   3'- cuCAUGCACg-----AGCuGCGG-CCaCGCCG- -5'
9151 3' -58.2 NC_002512.2 + 185193 0.66 0.917018
Target:  5'- cGAGaacGCGgcgGCggUCGACGCCGcG-GUGGCc -3'
miRNA:   3'- -CUCa--UGCa--CG--AGCUGCGGC-CaCGCCG- -5'
9151 3' -58.2 NC_002512.2 + 133233 0.66 0.917018
Target:  5'- cGAGgACGggaggGCggCGGCGCCccGGUcGCGGUu -3'
miRNA:   3'- -CUCaUGCa----CGa-GCUGCGG--CCA-CGCCG- -5'
9151 3' -58.2 NC_002512.2 + 74587 0.66 0.911431
Target:  5'- -----gGUGCUCGAgGCCGGggcccuccGuCGGCu -3'
miRNA:   3'- cucaugCACGAGCUgCGGCCa-------C-GCCG- -5'
9151 3' -58.2 NC_002512.2 + 98982 0.66 0.911431
Target:  5'- aGAGUGCGaGCcaCGAUgGCCGGccucugcGCGGCc -3'
miRNA:   3'- -CUCAUGCaCGa-GCUG-CGGCCa------CGCCG- -5'
9151 3' -58.2 NC_002512.2 + 87190 0.66 0.911431
Target:  5'- gGAGaccGCgGUGUUCGAgUGCuCGGUGaCGGCc -3'
miRNA:   3'- -CUCa--UG-CACGAGCU-GCG-GCCAC-GCCG- -5'
9151 3' -58.2 NC_002512.2 + 45451 0.66 0.911431
Target:  5'- ------cUGUcCGACGCCGGcgGCGGCc -3'
miRNA:   3'- cucaugcACGaGCUGCGGCCa-CGCCG- -5'
9151 3' -58.2 NC_002512.2 + 98320 0.66 0.907976
Target:  5'- cGAGgg---GCUCGGgGCCGGggacggggagggggGCGGCc -3'
miRNA:   3'- -CUCaugcaCGAGCUgCGGCCa-------------CGCCG- -5'
9151 3' -58.2 NC_002512.2 + 191062 0.66 0.905629
Target:  5'- cGGU-CGcGCcUGGCGCUGGcugUGCGGCa -3'
miRNA:   3'- cUCAuGCaCGaGCUGCGGCC---ACGCCG- -5'
9151 3' -58.2 NC_002512.2 + 225273 0.66 0.905629
Target:  5'- gGAGgGCGUcCUCGGCGuCCGucucGCGGCc -3'
miRNA:   3'- -CUCaUGCAcGAGCUGC-GGCca--CGCCG- -5'
9151 3' -58.2 NC_002512.2 + 124875 0.66 0.899614
Target:  5'- ---cGCGggGCUCGacGCGCCcGUGCGGa -3'
miRNA:   3'- cucaUGCa-CGAGC--UGCGGcCACGCCg -5'
9151 3' -58.2 NC_002512.2 + 198158 0.66 0.899614
Target:  5'- cGGgcCG-GgUCGGCGCCGGccgGCGGa -3'
miRNA:   3'- cUCauGCaCgAGCUGCGGCCa--CGCCg -5'
9151 3' -58.2 NC_002512.2 + 156050 0.66 0.899001
Target:  5'- cGGGUcgucgacACGgcgagGCucaUCGACGCCGGgcgcCGGCa -3'
miRNA:   3'- -CUCA-------UGCa----CG---AGCUGCGGCCac--GCCG- -5'
9151 3' -58.2 NC_002512.2 + 224060 0.66 0.893389
Target:  5'- cGGUGCGaccauUUCGACGCCGccgaacgggGCGGCg -3'
miRNA:   3'- cUCAUGCac---GAGCUGCGGCca-------CGCCG- -5'
9151 3' -58.2 NC_002512.2 + 88579 0.66 0.893389
Target:  5'- gGAG-ACGUcGUcgUCGcCGCCGGUGCcGCc -3'
miRNA:   3'- -CUCaUGCA-CG--AGCuGCGGCCACGcCG- -5'
9151 3' -58.2 NC_002512.2 + 121143 0.67 0.886955
Target:  5'- ---gACGgcgGCcgaGACGCCGGccGCGGCc -3'
miRNA:   3'- cucaUGCa--CGag-CUGCGGCCa-CGCCG- -5'
9151 3' -58.2 NC_002512.2 + 164244 0.67 0.886955
Target:  5'- -----gGUGUUCGGCGCCGuG-GCGGg -3'
miRNA:   3'- cucaugCACGAGCUGCGGC-CaCGCCg -5'
9151 3' -58.2 NC_002512.2 + 84527 0.67 0.886955
Target:  5'- -cGUAgcccuCGUaGC-CGGCGUCGG-GCGGCg -3'
miRNA:   3'- cuCAU-----GCA-CGaGCUGCGGCCaCGCCG- -5'
9151 3' -58.2 NC_002512.2 + 80648 0.67 0.884324
Target:  5'- ---cGCG-GCggCGGCGCCGGguccgucggucccGCGGCg -3'
miRNA:   3'- cucaUGCaCGa-GCUGCGGCCa------------CGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.