miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9151 5' -54.1 NC_002512.2 + 132689 0.66 0.981095
Target:  5'- cGGCCCgccgCCGcaGACGGGCGuCGUGGg -3'
miRNA:   3'- uCUGGGa---GGCcaCUGCUCGU-GUAUUa -5'
9151 5' -54.1 NC_002512.2 + 194094 0.66 0.981095
Target:  5'- cGAUCCUCCaagaauGGUGACGAuccgggucCACGUGAa -3'
miRNA:   3'- uCUGGGAGG------CCACUGCUc-------GUGUAUUa -5'
9151 5' -54.1 NC_002512.2 + 83636 0.66 0.981095
Target:  5'- cGGCCCaccaggucCCGGUcgaGGCaGAGCGCGUGGUc -3'
miRNA:   3'- uCUGGGa-------GGCCA---CUG-CUCGUGUAUUA- -5'
9151 5' -54.1 NC_002512.2 + 43461 0.66 0.978932
Target:  5'- gAGGCCCagCCGGc--CGAGCACGg--- -3'
miRNA:   3'- -UCUGGGa-GGCCacuGCUCGUGUauua -5'
9151 5' -54.1 NC_002512.2 + 32608 0.66 0.974064
Target:  5'- gAGGCuCUUCUGGcUGACGAuGCGgGUGAa -3'
miRNA:   3'- -UCUG-GGAGGCC-ACUGCU-CGUgUAUUa -5'
9151 5' -54.1 NC_002512.2 + 134762 0.66 0.974064
Target:  5'- cGGACCgUCCGGUucgucGGCGGGCcCGc--- -3'
miRNA:   3'- -UCUGGgAGGCCA-----CUGCUCGuGUauua -5'
9151 5' -54.1 NC_002512.2 + 192014 0.66 0.974064
Target:  5'- aAGACCgUCC--UGGCGGGCGCGg--- -3'
miRNA:   3'- -UCUGGgAGGccACUGCUCGUGUauua -5'
9151 5' -54.1 NC_002512.2 + 128396 0.66 0.971345
Target:  5'- cGGACCCcgucucgagcCCGGUGGCGGGguCGc--- -3'
miRNA:   3'- -UCUGGGa---------GGCCACUGCUCguGUauua -5'
9151 5' -54.1 NC_002512.2 + 95948 0.67 0.968427
Target:  5'- -cGCCCUCCGGcGGgGGGCugAg--- -3'
miRNA:   3'- ucUGGGAGGCCaCUgCUCGugUauua -5'
9151 5' -54.1 NC_002512.2 + 220209 0.67 0.968427
Target:  5'- gGGGCCCgacggcggcCCGGggGACGAGUGCGc--- -3'
miRNA:   3'- -UCUGGGa--------GGCCa-CUGCUCGUGUauua -5'
9151 5' -54.1 NC_002512.2 + 10345 0.67 0.965304
Target:  5'- aAGACCCgUCCGGUG---GGCACGc--- -3'
miRNA:   3'- -UCUGGG-AGGCCACugcUCGUGUauua -5'
9151 5' -54.1 NC_002512.2 + 106708 0.67 0.965304
Target:  5'- gGGGCUCUCCGG-GAUGAccGCGCu---- -3'
miRNA:   3'- -UCUGGGAGGCCaCUGCU--CGUGuauua -5'
9151 5' -54.1 NC_002512.2 + 39742 0.67 0.95842
Target:  5'- aAGACCCacCCGGUGggccagGCGAGCAgCAc--- -3'
miRNA:   3'- -UCUGGGa-GGCCAC------UGCUCGU-GUauua -5'
9151 5' -54.1 NC_002512.2 + 80571 0.67 0.95842
Target:  5'- --uCCCUCCGGcGGCGAGCccGCGc--- -3'
miRNA:   3'- ucuGGGAGGCCaCUGCUCG--UGUauua -5'
9151 5' -54.1 NC_002512.2 + 126333 0.67 0.954649
Target:  5'- gAGGCCgCcgcgUCCGG-GACGGGCGCGc--- -3'
miRNA:   3'- -UCUGG-G----AGGCCaCUGCUCGUGUauua -5'
9151 5' -54.1 NC_002512.2 + 123771 0.67 0.954649
Target:  5'- cGGGCUCUCCcGUGACGucuGGCuCGUGAa -3'
miRNA:   3'- -UCUGGGAGGcCACUGC---UCGuGUAUUa -5'
9151 5' -54.1 NC_002512.2 + 130816 0.68 0.950653
Target:  5'- uGGCCgaggUUCCGGUGACG-GCGCuguUGAa -3'
miRNA:   3'- uCUGG----GAGGCCACUGCuCGUGu--AUUa -5'
9151 5' -54.1 NC_002512.2 + 94907 0.68 0.950653
Target:  5'- -aGCUCU-CGG-GGCGAGCACAUGGa -3'
miRNA:   3'- ucUGGGAgGCCaCUGCUCGUGUAUUa -5'
9151 5' -54.1 NC_002512.2 + 207748 0.68 0.937284
Target:  5'- gGGACgCUCCGGgGugGAGCcgccgcCGUGGUg -3'
miRNA:   3'- -UCUGgGAGGCCaCugCUCGu-----GUAUUA- -5'
9151 5' -54.1 NC_002512.2 + 130666 0.69 0.921801
Target:  5'- gGGGCUCUCCGaGgaccggGACGGGCugcuCGUGGUg -3'
miRNA:   3'- -UCUGGGAGGC-Ca-----CUGCUCGu---GUAUUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.