miRNA display CGI


Results 41 - 60 of 186 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9153 3' -61.6 NC_002512.2 + 6336 0.66 0.796383
Target:  5'- gGGGGGACCgggcgcggggCCGGCgGgCCgCGGGc -3'
miRNA:   3'- -CCCCCUGGaa--------GGCUGgCgGGgGCUUc -5'
9153 3' -61.6 NC_002512.2 + 49832 0.66 0.820787
Target:  5'- aGGGGGucguCCggcacCCGcACCGCCUgggaUCGGAGa -3'
miRNA:   3'- -CCCCCu---GGaa---GGC-UGGCGGG----GGCUUC- -5'
9153 3' -61.6 NC_002512.2 + 4122 0.66 0.819994
Target:  5'- cGGGaacagauGGAUCccaugucCCGGCCGCgCCCCGAc- -3'
miRNA:   3'- -CCC-------CCUGGaa-----GGCUGGCG-GGGGCUuc -5'
9153 3' -61.6 NC_002512.2 + 121348 0.66 0.81279
Target:  5'- cGGcGGACCUucUCCG-CCGUcggguCCCCGGc- -3'
miRNA:   3'- cCC-CCUGGA--AGGCuGGCG-----GGGGCUuc -5'
9153 3' -61.6 NC_002512.2 + 1923 0.66 0.81279
Target:  5'- cGGGGcCCUccucUCCGGCU-CCCCCGc-- -3'
miRNA:   3'- cCCCCuGGA----AGGCUGGcGGGGGCuuc -5'
9153 3' -61.6 NC_002512.2 + 36052 0.66 0.804653
Target:  5'- cGGGGACgccCCGacuuuuaucGCCGaCCCCGAAGc -3'
miRNA:   3'- cCCCCUGgaaGGC---------UGGCgGGGGCUUC- -5'
9153 3' -61.6 NC_002512.2 + 129927 0.66 0.804653
Target:  5'- cGGGGGGCUgUCCGACgaacCCUUCGAc- -3'
miRNA:   3'- -CCCCCUGGaAGGCUGgc--GGGGGCUuc -5'
9153 3' -61.6 NC_002512.2 + 27871 0.66 0.804653
Target:  5'- cGGGGGACCcggCC--CCGCCaCCUGuccGAGa -3'
miRNA:   3'- -CCCCCUGGaa-GGcuGGCGG-GGGC---UUC- -5'
9153 3' -61.6 NC_002512.2 + 10451 0.66 0.804653
Target:  5'- cGGGGGcgcggaggagGCCg-CCG-CCGCCCCgGGc- -3'
miRNA:   3'- -CCCCC----------UGGaaGGCuGGCGGGGgCUuc -5'
9153 3' -61.6 NC_002512.2 + 39955 0.66 0.787986
Target:  5'- aGGGGGAgCagUCG-CCGCCgagaCCGGAGc -3'
miRNA:   3'- -CCCCCUgGaaGGCuGGCGGg---GGCUUC- -5'
9153 3' -61.6 NC_002512.2 + 133688 0.66 0.787986
Target:  5'- uGGccGACC-UCgCGGCCGCCuCCCGGAc -3'
miRNA:   3'- -CCccCUGGaAG-GCUGGCGG-GGGCUUc -5'
9153 3' -61.6 NC_002512.2 + 53866 0.66 0.796383
Target:  5'- aGGGGGACCgUCCGuuCC-CCagggaCCGAc- -3'
miRNA:   3'- -CCCCCUGGaAGGCu-GGcGGg----GGCUuc -5'
9153 3' -61.6 NC_002512.2 + 5917 0.67 0.762103
Target:  5'- cGGGGGAuacggccaguCCUcgcgCCGgaACCGUCCCCaGGGa -3'
miRNA:   3'- -CCCCCU----------GGAa---GGC--UGGCGGGGGcUUC- -5'
9153 3' -61.6 NC_002512.2 + 29561 0.67 0.761224
Target:  5'- aGGaGGACg--CCGgcgggaaGCCGCuCCCCGAGGg -3'
miRNA:   3'- cCC-CCUGgaaGGC-------UGGCG-GGGGCUUC- -5'
9153 3' -61.6 NC_002512.2 + 135583 0.67 0.753269
Target:  5'- cGGGGcgcaACCggguggaCGACCGCuCCCCGGc- -3'
miRNA:   3'- cCCCC----UGGaag----GCUGGCG-GGGGCUuc -5'
9153 3' -61.6 NC_002512.2 + 63378 0.67 0.753269
Target:  5'- cGGGGGCCgaUCCgGACCGCUucuucuuccUCCGAc- -3'
miRNA:   3'- cCCCCUGGa-AGG-CUGGCGG---------GGGCUuc -5'
9153 3' -61.6 NC_002512.2 + 45123 0.67 0.753269
Target:  5'- cGGGGucgacGACCa-CgGGCCGCCCgCCGAu- -3'
miRNA:   3'- -CCCC-----CUGGaaGgCUGGCGGG-GGCUuc -5'
9153 3' -61.6 NC_002512.2 + 39529 0.67 0.753269
Target:  5'- --aGGACCgggCCGA-CGCCCCCGucGu -3'
miRNA:   3'- cccCCUGGaa-GGCUgGCGGGGGCuuC- -5'
9153 3' -61.6 NC_002512.2 + 69131 0.67 0.750601
Target:  5'- -cGGGACC-UCCGugcccggggccggcGCCGuucCCCCCGAAa -3'
miRNA:   3'- ccCCCUGGaAGGC--------------UGGC---GGGGGCUUc -5'
9153 3' -61.6 NC_002512.2 + 10170 0.67 0.762103
Target:  5'- cGGGGGCCg-CCucUCGCgCCCCGAGc -3'
miRNA:   3'- cCCCCUGGaaGGcuGGCG-GGGGCUUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.