Results 21 - 40 of 186 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9153 | 3' | -61.6 | NC_002512.2 | + | 158855 | 0.66 | 0.820787 |
Target: 5'- gGGGGGACgUcgucgUCGACCGgccggcggcggcCCCCCGu-- -3' miRNA: 3'- -CCCCCUGgAa----GGCUGGC------------GGGGGCuuc -5' |
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9153 | 3' | -61.6 | NC_002512.2 | + | 132016 | 0.66 | 0.820787 |
Target: 5'- gGGGGGACCUcggcggcgacgUCGuCgGCCagggaCCGGAGg -3' miRNA: 3'- -CCCCCUGGAa----------GGCuGgCGGg----GGCUUC- -5' |
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9153 | 3' | -61.6 | NC_002512.2 | + | 6336 | 0.66 | 0.796383 |
Target: 5'- gGGGGGACCgggcgcggggCCGGCgGgCCgCGGGc -3' miRNA: 3'- -CCCCCUGGaa--------GGCUGgCgGGgGCUUc -5' |
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9153 | 3' | -61.6 | NC_002512.2 | + | 1923 | 0.66 | 0.81279 |
Target: 5'- cGGGGcCCUccucUCCGGCU-CCCCCGc-- -3' miRNA: 3'- cCCCCuGGA----AGGCUGGcGGGGGCuuc -5' |
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9153 | 3' | -61.6 | NC_002512.2 | + | 126918 | 0.66 | 0.816006 |
Target: 5'- gGGGGaGGCCgggcuggcgauacCCGcCCGCgCCCCGGu- -3' miRNA: 3'- -CCCC-CUGGaa-----------GGCuGGCG-GGGGCUuc -5' |
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9153 | 3' | -61.6 | NC_002512.2 | + | 49832 | 0.66 | 0.820787 |
Target: 5'- aGGGGGucguCCggcacCCGcACCGCCUgggaUCGGAGa -3' miRNA: 3'- -CCCCCu---GGaa---GGC-UGGCGGG----GGCUUC- -5' |
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9153 | 3' | -61.6 | NC_002512.2 | + | 57030 | 0.66 | 0.820787 |
Target: 5'- gGGGGGAgCgga-GGCCGCgUCCGAc- -3' miRNA: 3'- -CCCCCUgGaaggCUGGCGgGGGCUuc -5' |
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9153 | 3' | -61.6 | NC_002512.2 | + | 4122 | 0.66 | 0.819994 |
Target: 5'- cGGGaacagauGGAUCccaugucCCGGCCGCgCCCCGAc- -3' miRNA: 3'- -CCC-------CCUGGaa-----GGCUGGCG-GGGGCUuc -5' |
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9153 | 3' | -61.6 | NC_002512.2 | + | 53866 | 0.66 | 0.796383 |
Target: 5'- aGGGGGACCgUCCGuuCC-CCagggaCCGAc- -3' miRNA: 3'- -CCCCCUGGaAGGCu-GGcGGg----GGCUuc -5' |
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9153 | 3' | -61.6 | NC_002512.2 | + | 129927 | 0.66 | 0.804653 |
Target: 5'- cGGGGGGCUgUCCGACgaacCCUUCGAc- -3' miRNA: 3'- -CCCCCUGGaAGGCUGgc--GGGGGCUuc -5' |
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9153 | 3' | -61.6 | NC_002512.2 | + | 107009 | 0.66 | 0.820787 |
Target: 5'- cGGGGucGGCCgagagCCgGGCgCGCUCCCGAc- -3' miRNA: 3'- -CCCC--CUGGaa---GG-CUG-GCGGGGGCUuc -5' |
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9153 | 3' | -61.6 | NC_002512.2 | + | 95709 | 0.66 | 0.799707 |
Target: 5'- cGGGGGGCCgggaggggaagaCGGcuccCCGUCCCCGccGg -3' miRNA: 3'- -CCCCCUGGaag---------GCU----GGCGGGGGCuuC- -5' |
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9153 | 3' | -61.6 | NC_002512.2 | + | 148517 | 0.66 | 0.804653 |
Target: 5'- aGGaGGcGGCCg-CCGcCCGCCCCggccgCGAGGg -3' miRNA: 3'- -CC-CC-CUGGaaGGCuGGCGGGG-----GCUUC- -5' |
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9153 | 3' | -61.6 | NC_002512.2 | + | 194545 | 0.66 | 0.81279 |
Target: 5'- -cGGGACaa-CCGuaACCGCCCCgGGAa -3' miRNA: 3'- ccCCCUGgaaGGC--UGGCGGGGgCUUc -5' |
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9153 | 3' | -61.6 | NC_002512.2 | + | 182275 | 0.66 | 0.81279 |
Target: 5'- cGGGGaACUgcacgUCCGuCCGCuCCCUGGc- -3' miRNA: 3'- cCCCC-UGGa----AGGCuGGCG-GGGGCUuc -5' |
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9153 | 3' | -61.6 | NC_002512.2 | + | 225432 | 0.66 | 0.804653 |
Target: 5'- -uGGGGCCgacgCCGAcccCCGCgCCCGGc- -3' miRNA: 3'- ccCCCUGGaa--GGCU---GGCGgGGGCUuc -5' |
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9153 | 3' | -61.6 | NC_002512.2 | + | 118143 | 0.66 | 0.820787 |
Target: 5'- cGGGGGcggaACCgcgacauggCGACCguGCCCgCCGGAGa -3' miRNA: 3'- -CCCCC----UGGaag------GCUGG--CGGG-GGCUUC- -5' |
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9153 | 3' | -61.6 | NC_002512.2 | + | 128889 | 0.66 | 0.803832 |
Target: 5'- aGGGacgagacGGGCCUggCGAuCCGCCCgCCGcGGg -3' miRNA: 3'- -CCC-------CCUGGAagGCU-GGCGGG-GGCuUC- -5' |
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9153 | 3' | -61.6 | NC_002512.2 | + | 227464 | 0.66 | 0.796383 |
Target: 5'- cGGGGGagagGCCgggggCGGCCGgCCgCGAGGa -3' miRNA: 3'- -CCCCC----UGGaag--GCUGGCgGGgGCUUC- -5' |
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9153 | 3' | -61.6 | NC_002512.2 | + | 40940 | 0.66 | 0.795549 |
Target: 5'- cGGGGGAgagggaaCCgaCCG-CCGCgCCCCGc-- -3' miRNA: 3'- -CCCCCU-------GGaaGGCuGGCG-GGGGCuuc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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