Results 1 - 20 of 186 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9153 | 3' | -61.6 | NC_002512.2 | + | 85608 | 0.66 | 0.787986 |
Target: 5'- -cGGGugCcUCCG-CCGCCUCUGGGa -3' miRNA: 3'- ccCCCugGaAGGCuGGCGGGGGCUUc -5' |
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9153 | 3' | -61.6 | NC_002512.2 | + | 99410 | 0.66 | 0.779469 |
Target: 5'- cGGGGcGGCU--UCGucuCCGCCCCCGc-- -3' miRNA: 3'- -CCCC-CUGGaaGGCu--GGCGGGGGCuuc -5' |
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9153 | 3' | -61.6 | NC_002512.2 | + | 104439 | 0.66 | 0.779469 |
Target: 5'- uGGGGGGCgauguCUUCCGGUCGUUCUCGcGGg -3' miRNA: 3'- -CCCCCUG-----GAAGGCUGGCGGGGGCuUC- -5' |
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9153 | 3' | -61.6 | NC_002512.2 | + | 39955 | 0.66 | 0.787986 |
Target: 5'- aGGGGGAgCagUCG-CCGCCgagaCCGGAGc -3' miRNA: 3'- -CCCCCUgGaaGGCuGGCGGg---GGCUUC- -5' |
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9153 | 3' | -61.6 | NC_002512.2 | + | 72757 | 0.66 | 0.81279 |
Target: 5'- --cGGGCCcgCCG-CCGaCCCCCGAc- -3' miRNA: 3'- cccCCUGGaaGGCuGGC-GGGGGCUuc -5' |
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9153 | 3' | -61.6 | NC_002512.2 | + | 133688 | 0.66 | 0.787986 |
Target: 5'- uGGccGACC-UCgCGGCCGCCuCCCGGAc -3' miRNA: 3'- -CCccCUGGaAG-GCUGGCGG-GGGCUUc -5' |
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9153 | 3' | -61.6 | NC_002512.2 | + | 10451 | 0.66 | 0.804653 |
Target: 5'- cGGGGGcgcggaggagGCCg-CCG-CCGCCCCgGGc- -3' miRNA: 3'- -CCCCC----------UGGaaGGCuGGCGGGGgCUuc -5' |
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9153 | 3' | -61.6 | NC_002512.2 | + | 47869 | 0.66 | 0.779469 |
Target: 5'- --aGGGCCUUCU-ACCGCcugggccugaCCCCGAGGa -3' miRNA: 3'- cccCCUGGAAGGcUGGCG----------GGGGCUUC- -5' |
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9153 | 3' | -61.6 | NC_002512.2 | + | 40940 | 0.66 | 0.795549 |
Target: 5'- cGGGGGAgagggaaCCgaCCG-CCGCgCCCCGc-- -3' miRNA: 3'- -CCCCCU-------GGaaGGCuGGCG-GGGGCuuc -5' |
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9153 | 3' | -61.6 | NC_002512.2 | + | 81285 | 0.66 | 0.787986 |
Target: 5'- aGGGGGGCggUCCGG--GCCUgCGggGu -3' miRNA: 3'- -CCCCCUGgaAGGCUggCGGGgGCuuC- -5' |
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9153 | 3' | -61.6 | NC_002512.2 | + | 9704 | 0.66 | 0.794713 |
Target: 5'- cGGGGGuucgcggaaccuCCUcCCGACgcagagcacgaCGCCCuuGggGg -3' miRNA: 3'- -CCCCCu-----------GGAaGGCUG-----------GCGGGggCuuC- -5' |
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9153 | 3' | -61.6 | NC_002512.2 | + | 36052 | 0.66 | 0.804653 |
Target: 5'- cGGGGACgccCCGacuuuuaucGCCGaCCCCGAAGc -3' miRNA: 3'- cCCCCUGgaaGGC---------UGGCgGGGGCUUC- -5' |
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9153 | 3' | -61.6 | NC_002512.2 | + | 6336 | 0.66 | 0.796383 |
Target: 5'- gGGGGGACCgggcgcggggCCGGCgGgCCgCGGGc -3' miRNA: 3'- -CCCCCUGGaa--------GGCUGgCgGGgGCUUc -5' |
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9153 | 3' | -61.6 | NC_002512.2 | + | 53866 | 0.66 | 0.796383 |
Target: 5'- aGGGGGACCgUCCGuuCC-CCagggaCCGAc- -3' miRNA: 3'- -CCCCCUGGaAGGCu-GGcGGg----GGCUuc -5' |
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9153 | 3' | -61.6 | NC_002512.2 | + | 130239 | 0.66 | 0.804653 |
Target: 5'- cGGGGAUCggcUCgGGCgccggGCCCuCCGAGGg -3' miRNA: 3'- cCCCCUGGa--AGgCUGg----CGGG-GGCUUC- -5' |
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9153 | 3' | -61.6 | NC_002512.2 | + | 135822 | 0.66 | 0.793877 |
Target: 5'- gGGGGGAggagggucccgcgcCCUUCCcggucGCCGUcaCCgCCGAGGa -3' miRNA: 3'- -CCCCCU--------------GGAAGGc----UGGCG--GG-GGCUUC- -5' |
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9153 | 3' | -61.6 | NC_002512.2 | + | 68033 | 0.66 | 0.81279 |
Target: 5'- cGGGaGGACCg-CCGacGCCGUgUCCGGAa -3' miRNA: 3'- -CCC-CCUGGaaGGC--UGGCGgGGGCUUc -5' |
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9153 | 3' | -61.6 | NC_002512.2 | + | 64228 | 0.66 | 0.779469 |
Target: 5'- --aGGACCU--CGGCCugcgggaagGCCCCCGAAGc -3' miRNA: 3'- cccCCUGGAagGCUGG---------CGGGGGCUUC- -5' |
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9153 | 3' | -61.6 | NC_002512.2 | + | 27871 | 0.66 | 0.804653 |
Target: 5'- cGGGGGACCcggCC--CCGCCaCCUGuccGAGa -3' miRNA: 3'- -CCCCCUGGaa-GGcuGGCGG-GGGC---UUC- -5' |
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9153 | 3' | -61.6 | NC_002512.2 | + | 129927 | 0.66 | 0.804653 |
Target: 5'- cGGGGGGCUgUCCGACgaacCCUUCGAc- -3' miRNA: 3'- -CCCCCUGGaAGGCUGgc--GGGGGCUuc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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