miRNA display CGI


Results 1 - 20 of 186 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9153 3' -61.6 NC_002512.2 + 1923 0.66 0.81279
Target:  5'- cGGGGcCCUccucUCCGGCU-CCCCCGc-- -3'
miRNA:   3'- cCCCCuGGA----AGGCUGGcGGGGGCuuc -5'
9153 3' -61.6 NC_002512.2 + 2177 0.69 0.642213
Target:  5'- cGGGGACCguaCCG--CGCCCCCGc-- -3'
miRNA:   3'- cCCCCUGGaa-GGCugGCGGGGGCuuc -5'
9153 3' -61.6 NC_002512.2 + 2392 0.68 0.658278
Target:  5'- -cGGGucgcggcgucuccuACCUccucgcggCCGGCCGCCCCCGGc- -3'
miRNA:   3'- ccCCC--------------UGGAa-------GGCUGGCGGGGGCUuc -5'
9153 3' -61.6 NC_002512.2 + 4122 0.66 0.819994
Target:  5'- cGGGaacagauGGAUCccaugucCCGGCCGCgCCCCGAc- -3'
miRNA:   3'- -CCC-------CCUGGaa-----GGCUGGCG-GGGGCUuc -5'
9153 3' -61.6 NC_002512.2 + 4458 0.69 0.629914
Target:  5'- cGGGGGucggcgucgGCCccaacCCGaccccgaccccggcGCCGUCCCCGAAGa -3'
miRNA:   3'- -CCCCC---------UGGaa---GGC--------------UGGCGGGGGCUUC- -5'
9153 3' -61.6 NC_002512.2 + 5917 0.67 0.762103
Target:  5'- cGGGGGAuacggccaguCCUcgcgCCGgaACCGUCCCCaGGGa -3'
miRNA:   3'- -CCCCCU----------GGAa---GGC--UGGCGGGGGcUUC- -5'
9153 3' -61.6 NC_002512.2 + 6336 0.66 0.796383
Target:  5'- gGGGGGACCgggcgcggggCCGGCgGgCCgCGGGc -3'
miRNA:   3'- -CCCCCUGGaa--------GGCUGgCgGGgGCUUc -5'
9153 3' -61.6 NC_002512.2 + 7457 0.69 0.619508
Target:  5'- cGGGGGaaGCCgcggcgcggcugCCGGCC-CCCgCCGAAGc -3'
miRNA:   3'- -CCCCC--UGGaa----------GGCUGGcGGG-GGCUUC- -5'
9153 3' -61.6 NC_002512.2 + 9704 0.66 0.794713
Target:  5'- cGGGGGuucgcggaaccuCCUcCCGACgcagagcacgaCGCCCuuGggGg -3'
miRNA:   3'- -CCCCCu-----------GGAaGGCUG-----------GCGGGggCuuC- -5'
9153 3' -61.6 NC_002512.2 + 10053 0.71 0.511796
Target:  5'- cGGGccGGACCccCCGACCGaCCCCCu--- -3'
miRNA:   3'- -CCC--CCUGGaaGGCUGGC-GGGGGcuuc -5'
9153 3' -61.6 NC_002512.2 + 10170 0.67 0.762103
Target:  5'- cGGGGGCCg-CCucUCGCgCCCCGAGc -3'
miRNA:   3'- cCCCCUGGaaGGcuGGCG-GGGGCUUc -5'
9153 3' -61.6 NC_002512.2 + 10451 0.66 0.804653
Target:  5'- cGGGGGcgcggaggagGCCg-CCG-CCGCCCCgGGc- -3'
miRNA:   3'- -CCCCC----------UGGaaGGCuGGCGGGGgCUuc -5'
9153 3' -61.6 NC_002512.2 + 11577 0.67 0.770839
Target:  5'- cGGGGAgCacgagCGGCCGCCCagggCCGggGa -3'
miRNA:   3'- cCCCCUgGaag--GCUGGCGGG----GGCuuC- -5'
9153 3' -61.6 NC_002512.2 + 11885 0.69 0.613836
Target:  5'- uGGuGGACaucCCGAUggaGCCCCCGAAGc -3'
miRNA:   3'- cCC-CCUGgaaGGCUGg--CGGGGGCUUC- -5'
9153 3' -61.6 NC_002512.2 + 12142 0.69 0.645996
Target:  5'- cGGGGuuCUUcuucaagucgcggucCCuGCCGCCCCUGAAGc -3'
miRNA:   3'- cCCCCugGAA---------------GGcUGGCGGGGGCUUC- -5'
9153 3' -61.6 NC_002512.2 + 17884 0.7 0.594966
Target:  5'- cGGGGGACgUgauaggCGGCgGCggCCCCGAGGa -3'
miRNA:   3'- -CCCCCUGgAag----GCUGgCG--GGGGCUUC- -5'
9153 3' -61.6 NC_002512.2 + 23005 0.72 0.439647
Target:  5'- uGGuGACCUacCCGucggcgagcucggcGCCGCCCCCGAAGa -3'
miRNA:   3'- cCCcCUGGAa-GGC--------------UGGCGGGGGCUUC- -5'
9153 3' -61.6 NC_002512.2 + 27871 0.66 0.804653
Target:  5'- cGGGGGACCcggCC--CCGCCaCCUGuccGAGa -3'
miRNA:   3'- -CCCCCUGGaa-GGcuGGCGG-GGGC---UUC- -5'
9153 3' -61.6 NC_002512.2 + 28522 0.7 0.548292
Target:  5'- aGGGGGugaGCUgucgggUCCG-CCGCCgCCCGAu- -3'
miRNA:   3'- -CCCCC---UGGa-----AGGCuGGCGG-GGGCUuc -5'
9153 3' -61.6 NC_002512.2 + 29561 0.67 0.761224
Target:  5'- aGGaGGACg--CCGgcgggaaGCCGCuCCCCGAGGg -3'
miRNA:   3'- cCC-CCUGgaaGGC-------UGGCG-GGGGCUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.