miRNA display CGI


Results 1 - 20 of 186 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9153 3' -61.6 NC_002512.2 + 77147 1.09 0.001699
Target:  5'- cGGGGGACCUUCCGACCGCCCCCGAAGc -3'
miRNA:   3'- -CCCCCUGGAAGGCUGGCGGGGGCUUC- -5'
9153 3' -61.6 NC_002512.2 + 122797 0.8 0.163717
Target:  5'- cGGGccgccGACCgacCCGACCGCCCCCGAGa -3'
miRNA:   3'- -CCCc----CUGGaa-GGCUGGCGGGGGCUUc -5'
9153 3' -61.6 NC_002512.2 + 149008 0.78 0.226079
Target:  5'- cGGGGGGCCgccgCgGACCGCCCgacaCCGAGc -3'
miRNA:   3'- -CCCCCUGGaa--GgCUGGCGGG----GGCUUc -5'
9153 3' -61.6 NC_002512.2 + 95641 0.76 0.288295
Target:  5'- aGGGGGCggcUCGGCCGCCCCCGGc- -3'
miRNA:   3'- cCCCCUGgaaGGCUGGCGGGGGCUuc -5'
9153 3' -61.6 NC_002512.2 + 71015 0.75 0.316714
Target:  5'- cGGGGGGCCgccgCCGGCCGgucgacgacgacgucCCCCCGc-- -3'
miRNA:   3'- -CCCCCUGGaa--GGCUGGC---------------GGGGGCuuc -5'
9153 3' -61.6 NC_002512.2 + 226436 0.75 0.320749
Target:  5'- -cGGGACCUUcgucgccgucaCCGACCaGCCCCgCGAGGc -3'
miRNA:   3'- ccCCCUGGAA-----------GGCUGG-CGGGG-GCUUC- -5'
9153 3' -61.6 NC_002512.2 + 152694 0.75 0.32756
Target:  5'- aGGGGGCCUcCuCGAUCGUCCgCGAAGa -3'
miRNA:   3'- cCCCCUGGAaG-GCUGGCGGGgGCUUC- -5'
9153 3' -61.6 NC_002512.2 + 150069 0.75 0.341499
Target:  5'- gGGGGGACCg-CCG-CCGCCgCCGucGg -3'
miRNA:   3'- -CCCCCUGGaaGGCuGGCGGgGGCuuC- -5'
9153 3' -61.6 NC_002512.2 + 96287 0.74 0.378194
Target:  5'- gGGGGGGCUgccgCgGGCCGCCgCCGcGGg -3'
miRNA:   3'- -CCCCCUGGaa--GgCUGGCGGgGGCuUC- -5'
9153 3' -61.6 NC_002512.2 + 135220 0.74 0.385843
Target:  5'- cGGGGGGCCccCCGGCCccggGCCgCCuCGAGGc -3'
miRNA:   3'- -CCCCCUGGaaGGCUGG----CGG-GG-GCUUC- -5'
9153 3' -61.6 NC_002512.2 + 99036 0.73 0.409397
Target:  5'- uGGGGGCCUcgcCCGACCGCCgguacucgaCCgCGggGu -3'
miRNA:   3'- cCCCCUGGAa--GGCUGGCGG---------GG-GCuuC- -5'
9153 3' -61.6 NC_002512.2 + 164466 0.73 0.433826
Target:  5'- cGGGGGCga--CGACCGCCCgCCGAGc -3'
miRNA:   3'- cCCCCUGgaagGCUGGCGGG-GGCUUc -5'
9153 3' -61.6 NC_002512.2 + 23005 0.72 0.439647
Target:  5'- uGGuGACCUacCCGucggcgagcucggcGCCGCCCCCGAAGa -3'
miRNA:   3'- cCCcCUGGAa-GGC--------------UGGCGGGGGCUUC- -5'
9153 3' -61.6 NC_002512.2 + 201798 0.72 0.442156
Target:  5'- cGGGGcggcGACCUcUCCGccgucuccGCCGCgCCCGggGg -3'
miRNA:   3'- -CCCC----CUGGA-AGGC--------UGGCGgGGGCuuC- -5'
9153 3' -61.6 NC_002512.2 + 136084 0.72 0.445513
Target:  5'- cGGGGGGCCggcUgcggacgcccgucacCCGAuCCGCUCCCGAc- -3'
miRNA:   3'- -CCCCCUGGa--A---------------GGCU-GGCGGGGGCUuc -5'
9153 3' -61.6 NC_002512.2 + 88668 0.72 0.450575
Target:  5'- cGGGGACCgcCCGAacCCGCCCCgGc-- -3'
miRNA:   3'- cCCCCUGGaaGGCU--GGCGGGGgCuuc -5'
9153 3' -61.6 NC_002512.2 + 107087 0.72 0.459081
Target:  5'- aGGGGACCcgCCGccagggcccGgCGCCCUCGggGg -3'
miRNA:   3'- cCCCCUGGaaGGC---------UgGCGGGGGCuuC- -5'
9153 3' -61.6 NC_002512.2 + 82443 0.72 0.467672
Target:  5'- aGGGGGCg-UCgGucCCGCUCCCGAAGg -3'
miRNA:   3'- cCCCCUGgaAGgCu-GGCGGGGGCUUC- -5'
9153 3' -61.6 NC_002512.2 + 81445 0.72 0.467672
Target:  5'- cGGGGGGCCcggcccCCGuCCuCCCCCGgcGg -3'
miRNA:   3'- -CCCCCUGGaa----GGCuGGcGGGGGCuuC- -5'
9153 3' -61.6 NC_002512.2 + 101465 0.72 0.476345
Target:  5'- gGGGGGuggacACCggCCGAgaccccCCGUCCCCGGAc -3'
miRNA:   3'- -CCCCC-----UGGaaGGCU------GGCGGGGGCUUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.