miRNA display CGI


Results 1 - 20 of 186 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9153 3' -61.6 NC_002512.2 + 17884 0.7 0.594966
Target:  5'- cGGGGGACgUgauaggCGGCgGCggCCCCGAGGa -3'
miRNA:   3'- -CCCCCUGgAag----GCUGgCG--GGGGCUUC- -5'
9153 3' -61.6 NC_002512.2 + 76867 0.71 0.520832
Target:  5'- cGGGGACCgcUCCcGCCGaCCCgaCCGggGa -3'
miRNA:   3'- cCCCCUGGa-AGGcUGGC-GGG--GGCuuC- -5'
9153 3' -61.6 NC_002512.2 + 76917 0.71 0.520832
Target:  5'- cGGGGACCgcUCCcGCCGaCCCgaCCGggGa -3'
miRNA:   3'- cCCCCUGGa-AGGcUGGC-GGG--GGCuuC- -5'
9153 3' -61.6 NC_002512.2 + 76966 0.71 0.533585
Target:  5'- cGGGGACCgcUCCcgcugaccgaccgggGACCGCUCCCGu-- -3'
miRNA:   3'- cCCCCUGGa-AGG---------------CUGGCGGGGGCuuc -5'
9153 3' -61.6 NC_002512.2 + 86119 0.71 0.533585
Target:  5'- cGGGcgcggaggaggucgcGGACCUggaagCCGacgccgcgGCCGCCUCCGAGGc -3'
miRNA:   3'- -CCC---------------CCUGGAa----GGC--------UGGCGGGGGCUUC- -5'
9153 3' -61.6 NC_002512.2 + 58010 0.71 0.539084
Target:  5'- aGGGGGACg--CCGAggacggcguuCCGCCCCCu--- -3'
miRNA:   3'- -CCCCCUGgaaGGCU----------GGCGGGGGcuuc -5'
9153 3' -61.6 NC_002512.2 + 28522 0.7 0.548292
Target:  5'- aGGGGGugaGCUgucgggUCCG-CCGCCgCCCGAu- -3'
miRNA:   3'- -CCCCC---UGGa-----AGGCuGGCGG-GGGCUuc -5'
9153 3' -61.6 NC_002512.2 + 135296 0.7 0.548292
Target:  5'- -cGGGccccaguucGCCUgUCCGGCgGUCCCCGAGGu -3'
miRNA:   3'- ccCCC---------UGGA-AGGCUGgCGGGGGCUUC- -5'
9153 3' -61.6 NC_002512.2 + 139429 0.7 0.56685
Target:  5'- cGGGGACCcgcagcuggcCCGGCCGCCgCCCu--- -3'
miRNA:   3'- cCCCCUGGaa--------GGCUGGCGG-GGGcuuc -5'
9153 3' -61.6 NC_002512.2 + 10053 0.71 0.511796
Target:  5'- cGGGccGGACCccCCGACCGaCCCCCu--- -3'
miRNA:   3'- -CCC--CCUGGaaGGCUGGC-GGGGGcuuc -5'
9153 3' -61.6 NC_002512.2 + 61725 0.71 0.502826
Target:  5'- cGGGGGCCgcgUCCccucuCCGCCCCCc--- -3'
miRNA:   3'- cCCCCUGGa--AGGcu---GGCGGGGGcuuc -5'
9153 3' -61.6 NC_002512.2 + 134247 0.71 0.493925
Target:  5'- cGGGGGCgg-CCGAgCCGCCCCCu--- -3'
miRNA:   3'- cCCCCUGgaaGGCU-GGCGGGGGcuuc -5'
9153 3' -61.6 NC_002512.2 + 152694 0.75 0.32756
Target:  5'- aGGGGGCCUcCuCGAUCGUCCgCGAAGa -3'
miRNA:   3'- cCCCCUGGAaG-GCUGGCGGGgGCUUC- -5'
9153 3' -61.6 NC_002512.2 + 96287 0.74 0.378194
Target:  5'- gGGGGGGCUgccgCgGGCCGCCgCCGcGGg -3'
miRNA:   3'- -CCCCCUGGaa--GgCUGGCGGgGGCuUC- -5'
9153 3' -61.6 NC_002512.2 + 135220 0.74 0.385843
Target:  5'- cGGGGGGCCccCCGGCCccggGCCgCCuCGAGGc -3'
miRNA:   3'- -CCCCCUGGaaGGCUGG----CGG-GG-GCUUC- -5'
9153 3' -61.6 NC_002512.2 + 23005 0.72 0.439647
Target:  5'- uGGuGACCUacCCGucggcgagcucggcGCCGCCCCCGAAGa -3'
miRNA:   3'- cCCcCUGGAa-GGC--------------UGGCGGGGGCUUC- -5'
9153 3' -61.6 NC_002512.2 + 136084 0.72 0.445513
Target:  5'- cGGGGGGCCggcUgcggacgcccgucacCCGAuCCGCUCCCGAc- -3'
miRNA:   3'- -CCCCCUGGa--A---------------GGCU-GGCGGGGGCUuc -5'
9153 3' -61.6 NC_002512.2 + 81445 0.72 0.467672
Target:  5'- cGGGGGGCCcggcccCCGuCCuCCCCCGgcGg -3'
miRNA:   3'- -CCCCCUGGaa----GGCuGGcGGGGGCuuC- -5'
9153 3' -61.6 NC_002512.2 + 82443 0.72 0.467672
Target:  5'- aGGGGGCg-UCgGucCCGCUCCCGAAGg -3'
miRNA:   3'- cCCCCUGgaAGgCu-GGCGGGGGCUUC- -5'
9153 3' -61.6 NC_002512.2 + 142298 0.72 0.485097
Target:  5'- cGGGGGAuCCgacgcgUCCGucGCCGUCUgCGGAGa -3'
miRNA:   3'- -CCCCCU-GGa-----AGGC--UGGCGGGgGCUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.