miRNA display CGI


Results 1 - 20 of 186 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9153 3' -61.6 NC_002512.2 + 219239 0.66 0.820787
Target:  5'- -cGGGAUCgugCuCGGCCGCCUCUGGc- -3'
miRNA:   3'- ccCCCUGGaa-G-GCUGGCGGGGGCUuc -5'
9153 3' -61.6 NC_002512.2 + 226742 0.66 0.787986
Target:  5'- cGGcGGGACCgggcUCCGGCCGgacgaCgCGGAGg -3'
miRNA:   3'- -CC-CCCUGGa---AGGCUGGCgg---GgGCUUC- -5'
9153 3' -61.6 NC_002512.2 + 91814 0.66 0.787139
Target:  5'- uGGGucguuccugcaGGACCUgacgccguccgUCGACCagucccggcucauGCCCCCGAGGc -3'
miRNA:   3'- -CCC-----------CCUGGAa----------GGCUGG-------------CGGGGGCUUC- -5'
9153 3' -61.6 NC_002512.2 + 77147 1.09 0.001699
Target:  5'- cGGGGGACCUUCCGACCGCCCCCGAAGc -3'
miRNA:   3'- -CCCCCUGGAAGGCUGGCGGGGGCUUC- -5'
9153 3' -61.6 NC_002512.2 + 126918 0.66 0.816006
Target:  5'- gGGGGaGGCCgggcuggcgauacCCGcCCGCgCCCCGGu- -3'
miRNA:   3'- -CCCC-CUGGaa-----------GGCuGGCG-GGGGCUuc -5'
9153 3' -61.6 NC_002512.2 + 194545 0.66 0.81279
Target:  5'- -cGGGACaa-CCGuaACCGCCCCgGGAa -3'
miRNA:   3'- ccCCCUGgaaGGC--UGGCGGGGgCUUc -5'
9153 3' -61.6 NC_002512.2 + 182275 0.66 0.81279
Target:  5'- cGGGGaACUgcacgUCCGuCCGCuCCCUGGc- -3'
miRNA:   3'- cCCCC-UGGa----AGGCuGGCG-GGGGCUuc -5'
9153 3' -61.6 NC_002512.2 + 225432 0.66 0.804653
Target:  5'- -uGGGGCCgacgCCGAcccCCGCgCCCGGc- -3'
miRNA:   3'- ccCCCUGGaa--GGCU---GGCGgGGGCUuc -5'
9153 3' -61.6 NC_002512.2 + 128889 0.66 0.803832
Target:  5'- aGGGacgagacGGGCCUggCGAuCCGCCCgCCGcGGg -3'
miRNA:   3'- -CCC-------CCUGGAagGCU-GGCGGG-GGCuUC- -5'
9153 3' -61.6 NC_002512.2 + 166021 0.66 0.787986
Target:  5'- cGGGGACgCgUUCGGCgGCCguUCCGggGu -3'
miRNA:   3'- cCCCCUG-GaAGGCUGgCGG--GGGCuuC- -5'
9153 3' -61.6 NC_002512.2 + 227464 0.66 0.796383
Target:  5'- cGGGGGagagGCCgggggCGGCCGgCCgCGAGGa -3'
miRNA:   3'- -CCCCC----UGGaag--GCUGGCgGGgGCUUC- -5'
9153 3' -61.6 NC_002512.2 + 148517 0.66 0.804653
Target:  5'- aGGaGGcGGCCg-CCGcCCGCCCCggccgCGAGGg -3'
miRNA:   3'- -CC-CC-CUGGaaGGCuGGCGGGG-----GCUUC- -5'
9153 3' -61.6 NC_002512.2 + 158855 0.66 0.820787
Target:  5'- gGGGGGACgUcgucgUCGACCGgccggcggcggcCCCCCGu-- -3'
miRNA:   3'- -CCCCCUGgAa----GGCUGGC------------GGGGGCuuc -5'
9153 3' -61.6 NC_002512.2 + 211455 0.66 0.796383
Target:  5'- cGGGcGCCUg-CGGCUGCCCCgGAu- -3'
miRNA:   3'- cCCCcUGGAagGCUGGCGGGGgCUuc -5'
9153 3' -61.6 NC_002512.2 + 132016 0.66 0.820787
Target:  5'- gGGGGGACCUcggcggcgacgUCGuCgGCCagggaCCGGAGg -3'
miRNA:   3'- -CCCCCUGGAa----------GGCuGgCGGg----GGCUUC- -5'
9153 3' -61.6 NC_002512.2 + 218911 0.66 0.804653
Target:  5'- cGGGGcGGCUcgugCCG-CUGCCcuggCCCGAGGg -3'
miRNA:   3'- -CCCC-CUGGaa--GGCuGGCGG----GGGCUUC- -5'
9153 3' -61.6 NC_002512.2 + 92826 0.66 0.796383
Target:  5'- cGGGcgcGGcGCCUccUCCcuGGCCGUCCCCGGu- -3'
miRNA:   3'- -CCC---CC-UGGA--AGG--CUGGCGGGGGCUuc -5'
9153 3' -61.6 NC_002512.2 + 94677 0.66 0.787986
Target:  5'- cGGGGGGCCccCCGGCCcGCUggCGGAc -3'
miRNA:   3'- -CCCCCUGGaaGGCUGG-CGGggGCUUc -5'
9153 3' -61.6 NC_002512.2 + 107009 0.66 0.820787
Target:  5'- cGGGGucGGCCgagagCCgGGCgCGCUCCCGAc- -3'
miRNA:   3'- -CCCC--CUGGaa---GG-CUG-GCGGGGGCUuc -5'
9153 3' -61.6 NC_002512.2 + 189766 0.66 0.81279
Target:  5'- cGGGGGACaaaaUCCGuccucCCGCCguaCGAGGc -3'
miRNA:   3'- -CCCCCUGga--AGGCu----GGCGGgg-GCUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.