miRNA display CGI


Results 1 - 20 of 186 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9153 3' -61.6 NC_002512.2 + 227464 0.66 0.796383
Target:  5'- cGGGGGagagGCCgggggCGGCCGgCCgCGAGGa -3'
miRNA:   3'- -CCCCC----UGGaag--GCUGGCgGGgGCUUC- -5'
9153 3' -61.6 NC_002512.2 + 226742 0.66 0.787986
Target:  5'- cGGcGGGACCgggcUCCGGCCGgacgaCgCGGAGg -3'
miRNA:   3'- -CC-CCCUGGa---AGGCUGGCgg---GgGCUUC- -5'
9153 3' -61.6 NC_002512.2 + 226436 0.75 0.320749
Target:  5'- -cGGGACCUUcgucgccgucaCCGACCaGCCCCgCGAGGc -3'
miRNA:   3'- ccCCCUGGAA-----------GGCUGG-CGGGG-GCUUC- -5'
9153 3' -61.6 NC_002512.2 + 226215 0.7 0.57619
Target:  5'- cGGGaGGACCUcCgGACCGUcggCCgCGAGGg -3'
miRNA:   3'- -CCC-CCUGGAaGgCUGGCG---GGgGCUUC- -5'
9153 3' -61.6 NC_002512.2 + 225998 0.68 0.707876
Target:  5'- aGGGGACCgggacgCCGguGCUGaCUCCGAGGa -3'
miRNA:   3'- cCCCCUGGaa----GGC--UGGCgGGGGCUUC- -5'
9153 3' -61.6 NC_002512.2 + 225432 0.66 0.804653
Target:  5'- -uGGGGCCgacgCCGAcccCCGCgCCCGGc- -3'
miRNA:   3'- ccCCCUGGaa--GGCU---GGCGgGGGCUuc -5'
9153 3' -61.6 NC_002512.2 + 224715 0.68 0.661108
Target:  5'- -uGGGGCCggCCG-CCGCCCCgGucGc -3'
miRNA:   3'- ccCCCUGGaaGGCuGGCGGGGgCuuC- -5'
9153 3' -61.6 NC_002512.2 + 222673 0.69 0.651667
Target:  5'- aGGGGcGCCUcgagUUCGACUGCgCCCGGc- -3'
miRNA:   3'- -CCCCcUGGA----AGGCUGGCGgGGGCUuc -5'
9153 3' -61.6 NC_002512.2 + 222593 0.66 0.779469
Target:  5'- cGGaGGaGGCCUgUCCG---GCCCCCGggGc -3'
miRNA:   3'- -CC-CC-CUGGA-AGGCuggCGGGGGCuuC- -5'
9153 3' -61.6 NC_002512.2 + 222421 0.69 0.623291
Target:  5'- cGGGGGCCggcagCCGcGCCGCggcuucCCCCGGGc -3'
miRNA:   3'- cCCCCUGGaa---GGC-UGGCG------GGGGCUUc -5'
9153 3' -61.6 NC_002512.2 + 222060 0.69 0.623291
Target:  5'- uGGGGaACUUUCCGcucaaccaguCCGCuCCCCGGAc -3'
miRNA:   3'- cCCCC-UGGAAGGCu---------GGCG-GGGGCUUc -5'
9153 3' -61.6 NC_002512.2 + 221163 0.69 0.632753
Target:  5'- cGGGcGGGCgCgcgcggCCGACCGaCCUCGGAGu -3'
miRNA:   3'- -CCC-CCUG-Gaa----GGCUGGCgGGGGCUUC- -5'
9153 3' -61.6 NC_002512.2 + 221095 0.68 0.717093
Target:  5'- uGGGGGacGCCcUCCGG-CGCCUCCucGGg -3'
miRNA:   3'- -CCCCC--UGGaAGGCUgGCGGGGGcuUC- -5'
9153 3' -61.6 NC_002512.2 + 220313 0.68 0.698603
Target:  5'- cGGGGGGCCgggggCCGG--GCUCCgGggGg -3'
miRNA:   3'- -CCCCCUGGaa---GGCUggCGGGGgCuuC- -5'
9153 3' -61.6 NC_002512.2 + 220137 0.71 0.493925
Target:  5'- cGGcGGGuCCggcUCCG-CCGCCCCCaAGGg -3'
miRNA:   3'- -CC-CCCuGGa--AGGCuGGCGGGGGcUUC- -5'
9153 3' -61.6 NC_002512.2 + 219239 0.66 0.820787
Target:  5'- -cGGGAUCgugCuCGGCCGCCUCUGGc- -3'
miRNA:   3'- ccCCCUGGaa-G-GCUGGCGGGGGCUuc -5'
9153 3' -61.6 NC_002512.2 + 218911 0.66 0.804653
Target:  5'- cGGGGcGGCUcgugCCG-CUGCCcuggCCCGAGGg -3'
miRNA:   3'- -CCCC-CUGGaa--GGCuGGCGG----GGGCUUC- -5'
9153 3' -61.6 NC_002512.2 + 212427 0.67 0.770839
Target:  5'- cGGGaggucgaguucGGGCCggCCGGCCGCgaccgCCgCGAGGa -3'
miRNA:   3'- -CCC-----------CCUGGaaGGCUGGCG-----GGgGCUUC- -5'
9153 3' -61.6 NC_002512.2 + 211455 0.66 0.796383
Target:  5'- cGGGcGCCUg-CGGCUGCCCCgGAu- -3'
miRNA:   3'- cCCCcUGGAagGCUGGCGGGGgCUuc -5'
9153 3' -61.6 NC_002512.2 + 211349 0.66 0.776891
Target:  5'- uGGGGGACgCgcgcggcCUGACCGCCCggcgcggcaugcugCgGAAGa -3'
miRNA:   3'- -CCCCCUG-Gaa-----GGCUGGCGGG--------------GgCUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.