miRNA display CGI


Results 21 - 40 of 186 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9153 3' -61.6 NC_002512.2 + 32045 0.68 0.707876
Target:  5'- --aGGGCCUcCCG-CCGCCCCuCGAu- -3'
miRNA:   3'- cccCCUGGAaGGCuGGCGGGG-GCUuc -5'
9153 3' -61.6 NC_002512.2 + 32549 0.68 0.693017
Target:  5'- uGGGGGAUCUucUCCaGCCGCCgggcgccgcgggugCCGggGu -3'
miRNA:   3'- -CCCCCUGGA--AGGcUGGCGGg-------------GGCuuC- -5'
9153 3' -61.6 NC_002512.2 + 33701 0.68 0.717093
Target:  5'- -aGGGACCcggCCG-UCGCCCCCucGGg -3'
miRNA:   3'- ccCCCUGGaa-GGCuGGCGGGGGcuUC- -5'
9153 3' -61.6 NC_002512.2 + 36052 0.66 0.804653
Target:  5'- cGGGGACgccCCGacuuuuaucGCCGaCCCCGAAGc -3'
miRNA:   3'- cCCCCUGgaaGGC---------UGGCgGGGGCUUC- -5'
9153 3' -61.6 NC_002512.2 + 38657 0.69 0.642213
Target:  5'- cGGGuACCgaggaggCCGGggaCGCCCCCGggGa -3'
miRNA:   3'- cCCCcUGGaa-----GGCUg--GCGGGGGCuuC- -5'
9153 3' -61.6 NC_002512.2 + 39529 0.67 0.753269
Target:  5'- --aGGACCgggCCGA-CGCCCCCGucGu -3'
miRNA:   3'- cccCCUGGaa-GGCUgGCGGGGGCuuC- -5'
9153 3' -61.6 NC_002512.2 + 39955 0.66 0.787986
Target:  5'- aGGGGGAgCagUCG-CCGCCgagaCCGGAGc -3'
miRNA:   3'- -CCCCCUgGaaGGCuGGCGGg---GGCUUC- -5'
9153 3' -61.6 NC_002512.2 + 40940 0.66 0.795549
Target:  5'- cGGGGGAgagggaaCCgaCCG-CCGCgCCCCGc-- -3'
miRNA:   3'- -CCCCCU-------GGaaGGCuGGCG-GGGGCuuc -5'
9153 3' -61.6 NC_002512.2 + 41100 0.68 0.689283
Target:  5'- cGGGGccGCCgaggCCGgaGCCGCCgCCGGAa -3'
miRNA:   3'- cCCCC--UGGaa--GGC--UGGCGGgGGCUUc -5'
9153 3' -61.6 NC_002512.2 + 45123 0.67 0.753269
Target:  5'- cGGGGucgacGACCa-CgGGCCGCCCgCCGAu- -3'
miRNA:   3'- -CCCC-----CUGGaaGgCUGGCGGG-GGCUuc -5'
9153 3' -61.6 NC_002512.2 + 45525 0.68 0.702318
Target:  5'- -cGGGACCgcaaUCCGAUCGgggcgucgcauauaCCCCGAGGc -3'
miRNA:   3'- ccCCCUGGa---AGGCUGGCg-------------GGGGCUUC- -5'
9153 3' -61.6 NC_002512.2 + 47869 0.66 0.779469
Target:  5'- --aGGGCCUUCU-ACCGCcugggccugaCCCCGAGGa -3'
miRNA:   3'- cccCCUGGAAGGcUGGCG----------GGGGCUUC- -5'
9153 3' -61.6 NC_002512.2 + 49832 0.66 0.820787
Target:  5'- aGGGGGucguCCggcacCCGcACCGCCUgggaUCGGAGa -3'
miRNA:   3'- -CCCCCu---GGaa---GGC-UGGCGGG----GGCUUC- -5'
9153 3' -61.6 NC_002512.2 + 51642 0.69 0.642213
Target:  5'- --cGGACCcggagaCCGcGCCGUCCCCGGAGa -3'
miRNA:   3'- cccCCUGGaa----GGC-UGGCGGGGGCUUC- -5'
9153 3' -61.6 NC_002512.2 + 53866 0.66 0.796383
Target:  5'- aGGGGGACCgUCCGuuCC-CCagggaCCGAc- -3'
miRNA:   3'- -CCCCCUGGaAGGCu-GGcGGg----GGCUuc -5'
9153 3' -61.6 NC_002512.2 + 57030 0.66 0.820787
Target:  5'- gGGGGGAgCgga-GGCCGCgUCCGAc- -3'
miRNA:   3'- -CCCCCUgGaaggCUGGCGgGGGCUuc -5'
9153 3' -61.6 NC_002512.2 + 58010 0.71 0.539084
Target:  5'- aGGGGGACg--CCGAggacggcguuCCGCCCCCu--- -3'
miRNA:   3'- -CCCCCUGgaaGGCU----------GGCGGGGGcuuc -5'
9153 3' -61.6 NC_002512.2 + 60272 0.67 0.770839
Target:  5'- --uGGACCUgCCGGCCGa-CCUGAAGa -3'
miRNA:   3'- cccCCUGGAaGGCUGGCggGGGCUUC- -5'
9153 3' -61.6 NC_002512.2 + 61725 0.71 0.502826
Target:  5'- cGGGGGCCgcgUCCccucuCCGCCCCCc--- -3'
miRNA:   3'- cCCCCUGGa--AGGcu---GGCGGGGGcuuc -5'
9153 3' -61.6 NC_002512.2 + 63378 0.67 0.753269
Target:  5'- cGGGGGCCgaUCCgGACCGCUucuucuuccUCCGAc- -3'
miRNA:   3'- cCCCCUGGa-AGG-CUGGCGG---------GGGCUuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.