miRNA display CGI


Results 61 - 80 of 186 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9153 3' -61.6 NC_002512.2 + 5917 0.67 0.762103
Target:  5'- cGGGGGAuacggccaguCCUcgcgCCGgaACCGUCCCCaGGGa -3'
miRNA:   3'- -CCCCCU----------GGAa---GGC--UGGCGGGGGcUUC- -5'
9153 3' -61.6 NC_002512.2 + 112977 0.67 0.762103
Target:  5'- cGGGGACgCcgUCCGAggagcCCGCCCCgGc-- -3'
miRNA:   3'- cCCCCUG-Ga-AGGCU-----GGCGGGGgCuuc -5'
9153 3' -61.6 NC_002512.2 + 194635 0.67 0.762103
Target:  5'- cGGGGGACCUgcCCGuCCucuUCUCCGAu- -3'
miRNA:   3'- -CCCCCUGGAa-GGCuGGc--GGGGGCUuc -5'
9153 3' -61.6 NC_002512.2 + 149631 0.67 0.762103
Target:  5'- gGGGaGGACCgcacggagcCCGGcCCGCacguCCCGGAGc -3'
miRNA:   3'- -CCC-CCUGGaa-------GGCU-GGCGg---GGGCUUC- -5'
9153 3' -61.6 NC_002512.2 + 195535 0.67 0.762103
Target:  5'- cGGGGuACCUccUCCGcCCGCUcagcuCCCGGGu -3'
miRNA:   3'- cCCCC-UGGA--AGGCuGGCGG-----GGGCUUc -5'
9153 3' -61.6 NC_002512.2 + 29561 0.67 0.761224
Target:  5'- aGGaGGACg--CCGgcgggaaGCCGCuCCCCGAGGg -3'
miRNA:   3'- cCC-CCUGgaaGGC-------UGGCG-GGGGCUUC- -5'
9153 3' -61.6 NC_002512.2 + 202228 0.67 0.761224
Target:  5'- cGGGGuucgucuccauccGACCUcCCGuuuCCGCCucgcgCCCGGAGc -3'
miRNA:   3'- -CCCC-------------CUGGAaGGCu--GGCGG-----GGGCUUC- -5'
9153 3' -61.6 NC_002512.2 + 111092 0.67 0.756814
Target:  5'- cGGGGGCCcacagcucCCGcccggcggcggaggcGCCGCCCgCGggGu -3'
miRNA:   3'- cCCCCUGGaa------GGC---------------UGGCGGGgGCuuC- -5'
9153 3' -61.6 NC_002512.2 + 45123 0.67 0.753269
Target:  5'- cGGGGucgacGACCa-CgGGCCGCCCgCCGAu- -3'
miRNA:   3'- -CCCC-----CUGGaaGgCUGGCGGG-GGCUuc -5'
9153 3' -61.6 NC_002512.2 + 135583 0.67 0.753269
Target:  5'- cGGGGcgcaACCggguggaCGACCGCuCCCCGGc- -3'
miRNA:   3'- cCCCC----UGGaag----GCUGGCG-GGGGCUuc -5'
9153 3' -61.6 NC_002512.2 + 63378 0.67 0.753269
Target:  5'- cGGGGGCCgaUCCgGACCGCUucuucuuccUCCGAc- -3'
miRNA:   3'- cCCCCUGGa-AGG-CUGGCGG---------GGGCUuc -5'
9153 3' -61.6 NC_002512.2 + 39529 0.67 0.753269
Target:  5'- --aGGACCgggCCGA-CGCCCCCGucGu -3'
miRNA:   3'- cccCCUGGaa-GGCUgGCGGGGGCuuC- -5'
9153 3' -61.6 NC_002512.2 + 205032 0.67 0.75238
Target:  5'- -cGGGGCCgcgUCCG-CCGCCgaccggccgcgggCCCGGAc -3'
miRNA:   3'- ccCCCUGGa--AGGCuGGCGG-------------GGGCUUc -5'
9153 3' -61.6 NC_002512.2 + 209033 0.67 0.750601
Target:  5'- cGGGGcGGCCgcgucccggagcgaUUCCGACgGCuCCuCCGAc- -3'
miRNA:   3'- -CCCC-CUGG--------------AAGGCUGgCG-GG-GGCUuc -5'
9153 3' -61.6 NC_002512.2 + 69131 0.67 0.750601
Target:  5'- -cGGGACC-UCCGugcccggggccggcGCCGuucCCCCCGAAa -3'
miRNA:   3'- ccCCCUGGaAGGC--------------UGGC---GGGGGCUUc -5'
9153 3' -61.6 NC_002512.2 + 114153 0.67 0.744343
Target:  5'- uGGuGGGCagcgucgUCuCGGCCGCCUCCGAc- -3'
miRNA:   3'- cCC-CCUGga-----AG-GCUGGCGGGGGCUuc -5'
9153 3' -61.6 NC_002512.2 + 103099 0.67 0.738947
Target:  5'- cGGGGACgggcgcggcacgcguCgccgCCGccGCCGCgCCCCGAGGc -3'
miRNA:   3'- cCCCCUG---------------Gaa--GGC--UGGCG-GGGGCUUC- -5'
9153 3' -61.6 NC_002512.2 + 135039 0.67 0.735334
Target:  5'- cGGGGGCCcgUCUGACgcguacaGCCCCUGc-- -3'
miRNA:   3'- cCCCCUGGa-AGGCUGg------CGGGGGCuuc -5'
9153 3' -61.6 NC_002512.2 + 208817 0.67 0.735334
Target:  5'- -cGGGACCgccgcCCGugCGCCCUCa--- -3'
miRNA:   3'- ccCCCUGGaa---GGCugGCGGGGGcuuc -5'
9153 3' -61.6 NC_002512.2 + 130476 0.67 0.735334
Target:  5'- cGGGGGCggagaCGaaGCCGCCCCgGGAGu -3'
miRNA:   3'- cCCCCUGgaag-GC--UGGCGGGGgCUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.