miRNA display CGI


Results 41 - 60 of 186 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9153 3' -61.6 NC_002512.2 + 39955 0.66 0.787986
Target:  5'- aGGGGGAgCagUCG-CCGCCgagaCCGGAGc -3'
miRNA:   3'- -CCCCCUgGaaGGCuGGCGGg---GGCUUC- -5'
9153 3' -61.6 NC_002512.2 + 91814 0.66 0.787139
Target:  5'- uGGGucguuccugcaGGACCUgacgccguccgUCGACCagucccggcucauGCCCCCGAGGc -3'
miRNA:   3'- -CCC-----------CCUGGAa----------GGCUGG-------------CGGGGGCUUC- -5'
9153 3' -61.6 NC_002512.2 + 95854 0.66 0.779469
Target:  5'- cGGGGGcggcguCCUcCCagGGCCGCgCgCCGAGGa -3'
miRNA:   3'- -CCCCCu-----GGAaGG--CUGGCGgG-GGCUUC- -5'
9153 3' -61.6 NC_002512.2 + 222593 0.66 0.779469
Target:  5'- cGGaGGaGGCCUgUCCG---GCCCCCGggGc -3'
miRNA:   3'- -CC-CC-CUGGA-AGGCuggCGGGGGCuuC- -5'
9153 3' -61.6 NC_002512.2 + 158548 0.66 0.779469
Target:  5'- uGGuGGACCUgcuggUgGGCCGCUCCUGGc- -3'
miRNA:   3'- cCC-CCUGGAa----GgCUGGCGGGGGCUuc -5'
9153 3' -61.6 NC_002512.2 + 104439 0.66 0.779469
Target:  5'- uGGGGGGCgauguCUUCCGGUCGUUCUCGcGGg -3'
miRNA:   3'- -CCCCCUG-----GAAGGCUGGCGGGGGCuUC- -5'
9153 3' -61.6 NC_002512.2 + 99410 0.66 0.779469
Target:  5'- cGGGGcGGCU--UCGucuCCGCCCCCGc-- -3'
miRNA:   3'- -CCCC-CUGGaaGGCu--GGCGGGGGCuuc -5'
9153 3' -61.6 NC_002512.2 + 64228 0.66 0.779469
Target:  5'- --aGGACCU--CGGCCugcgggaagGCCCCCGAAGc -3'
miRNA:   3'- cccCCUGGAagGCUGG---------CGGGGGCUUC- -5'
9153 3' -61.6 NC_002512.2 + 47869 0.66 0.779469
Target:  5'- --aGGGCCUUCU-ACCGCcugggccugaCCCCGAGGa -3'
miRNA:   3'- cccCCUGGAAGGcUGGCG----------GGGGCUUC- -5'
9153 3' -61.6 NC_002512.2 + 211349 0.66 0.776891
Target:  5'- uGGGGGACgCgcgcggcCUGACCGCCCggcgcggcaugcugCgGAAGa -3'
miRNA:   3'- -CCCCCUG-Gaa-----GGCUGGCGGG--------------GgCUUC- -5'
9153 3' -61.6 NC_002512.2 + 166406 0.66 0.776891
Target:  5'- cGGGGGAugguCCUgCCGAgccugcccucuuccCCGCCguccUCCGggGg -3'
miRNA:   3'- -CCCCCU----GGAaGGCU--------------GGCGG----GGGCuuC- -5'
9153 3' -61.6 NC_002512.2 + 190431 0.66 0.776891
Target:  5'- cGGGagcGGGCCgucaCCGACCGggacgugaccuccaCCCCCGuGGa -3'
miRNA:   3'- -CCC---CCUGGaa--GGCUGGC--------------GGGGGCuUC- -5'
9153 3' -61.6 NC_002512.2 + 60272 0.67 0.770839
Target:  5'- --uGGACCUgCCGGCCGa-CCUGAAGa -3'
miRNA:   3'- cccCCUGGAaGGCUGGCggGGGCUUC- -5'
9153 3' -61.6 NC_002512.2 + 102131 0.67 0.770839
Target:  5'- aGGGGGACC--CUGGCCGUCUaCGGc- -3'
miRNA:   3'- -CCCCCUGGaaGGCUGGCGGGgGCUuc -5'
9153 3' -61.6 NC_002512.2 + 11577 0.67 0.770839
Target:  5'- cGGGGAgCacgagCGGCCGCCCagggCCGggGa -3'
miRNA:   3'- cCCCCUgGaag--GCUGGCGGG----GGCuuC- -5'
9153 3' -61.6 NC_002512.2 + 188658 0.67 0.770839
Target:  5'- cGGcGGcGGCCcgucgUCCGACCGCggcggUCUCGggGa -3'
miRNA:   3'- -CC-CC-CUGGa----AGGCUGGCG-----GGGGCuuC- -5'
9153 3' -61.6 NC_002512.2 + 212427 0.67 0.770839
Target:  5'- cGGGaggucgaguucGGGCCggCCGGCCGCgaccgCCgCGAGGa -3'
miRNA:   3'- -CCC-----------CCUGGaaGGCUGGCG-----GGgGCUUC- -5'
9153 3' -61.6 NC_002512.2 + 109082 0.67 0.76997
Target:  5'- cGGGuccgagaGACCgccgccgUCCcGCCGCCCCCGccGa -3'
miRNA:   3'- cCCC-------CUGGa------AGGcUGGCGGGGGCuuC- -5'
9153 3' -61.6 NC_002512.2 + 5917 0.67 0.762103
Target:  5'- cGGGGGAuacggccaguCCUcgcgCCGgaACCGUCCCCaGGGa -3'
miRNA:   3'- -CCCCCU----------GGAa---GGC--UGGCGGGGGcUUC- -5'
9153 3' -61.6 NC_002512.2 + 10170 0.67 0.762103
Target:  5'- cGGGGGCCg-CCucUCGCgCCCCGAGc -3'
miRNA:   3'- cCCCCUGGaaGGcuGGCG-GGGGCUUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.