miRNA display CGI


Results 21 - 40 of 186 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9153 3' -61.6 NC_002512.2 + 218911 0.66 0.804653
Target:  5'- cGGGGcGGCUcgugCCG-CUGCCcuggCCCGAGGg -3'
miRNA:   3'- -CCCC-CUGGaa--GGCuGGCGG----GGGCUUC- -5'
9153 3' -61.6 NC_002512.2 + 148517 0.66 0.804653
Target:  5'- aGGaGGcGGCCg-CCGcCCGCCCCggccgCGAGGg -3'
miRNA:   3'- -CC-CC-CUGGaaGGCuGGCGGGG-----GCUUC- -5'
9153 3' -61.6 NC_002512.2 + 225432 0.66 0.804653
Target:  5'- -uGGGGCCgacgCCGAcccCCGCgCCCGGc- -3'
miRNA:   3'- ccCCCUGGaa--GGCU---GGCGgGGGCUuc -5'
9153 3' -61.6 NC_002512.2 + 130239 0.66 0.804653
Target:  5'- cGGGGAUCggcUCgGGCgccggGCCCuCCGAGGg -3'
miRNA:   3'- cCCCCUGGa--AGgCUGg----CGGG-GGCUUC- -5'
9153 3' -61.6 NC_002512.2 + 128889 0.66 0.803832
Target:  5'- aGGGacgagacGGGCCUggCGAuCCGCCCgCCGcGGg -3'
miRNA:   3'- -CCC-------CCUGGAagGCU-GGCGGG-GGCuUC- -5'
9153 3' -61.6 NC_002512.2 + 95709 0.66 0.799707
Target:  5'- cGGGGGGCCgggaggggaagaCGGcuccCCGUCCCCGccGg -3'
miRNA:   3'- -CCCCCUGGaag---------GCU----GGCGGGGGCuuC- -5'
9153 3' -61.6 NC_002512.2 + 92826 0.66 0.796383
Target:  5'- cGGGcgcGGcGCCUccUCCcuGGCCGUCCCCGGu- -3'
miRNA:   3'- -CCC---CC-UGGA--AGG--CUGGCGGGGGCUuc -5'
9153 3' -61.6 NC_002512.2 + 227464 0.66 0.796383
Target:  5'- cGGGGGagagGCCgggggCGGCCGgCCgCGAGGa -3'
miRNA:   3'- -CCCCC----UGGaag--GCUGGCgGGgGCUUC- -5'
9153 3' -61.6 NC_002512.2 + 53866 0.66 0.796383
Target:  5'- aGGGGGACCgUCCGuuCC-CCagggaCCGAc- -3'
miRNA:   3'- -CCCCCUGGaAGGCu-GGcGGg----GGCUuc -5'
9153 3' -61.6 NC_002512.2 + 6336 0.66 0.796383
Target:  5'- gGGGGGACCgggcgcggggCCGGCgGgCCgCGGGc -3'
miRNA:   3'- -CCCCCUGGaa--------GGCUGgCgGGgGCUUc -5'
9153 3' -61.6 NC_002512.2 + 211455 0.66 0.796383
Target:  5'- cGGGcGCCUg-CGGCUGCCCCgGAu- -3'
miRNA:   3'- cCCCcUGGAagGCUGGCGGGGgCUuc -5'
9153 3' -61.6 NC_002512.2 + 40940 0.66 0.795549
Target:  5'- cGGGGGAgagggaaCCgaCCG-CCGCgCCCCGc-- -3'
miRNA:   3'- -CCCCCU-------GGaaGGCuGGCG-GGGGCuuc -5'
9153 3' -61.6 NC_002512.2 + 9704 0.66 0.794713
Target:  5'- cGGGGGuucgcggaaccuCCUcCCGACgcagagcacgaCGCCCuuGggGg -3'
miRNA:   3'- -CCCCCu-----------GGAaGGCUG-----------GCGGGggCuuC- -5'
9153 3' -61.6 NC_002512.2 + 135822 0.66 0.793877
Target:  5'- gGGGGGAggagggucccgcgcCCUUCCcggucGCCGUcaCCgCCGAGGa -3'
miRNA:   3'- -CCCCCU--------------GGAAGGc----UGGCG--GG-GGCUUC- -5'
9153 3' -61.6 NC_002512.2 + 85608 0.66 0.787986
Target:  5'- -cGGGugCcUCCG-CCGCCUCUGGGa -3'
miRNA:   3'- ccCCCugGaAGGCuGGCGGGGGCUUc -5'
9153 3' -61.6 NC_002512.2 + 133688 0.66 0.787986
Target:  5'- uGGccGACC-UCgCGGCCGCCuCCCGGAc -3'
miRNA:   3'- -CCccCUGGaAG-GCUGGCGG-GGGCUUc -5'
9153 3' -61.6 NC_002512.2 + 81285 0.66 0.787986
Target:  5'- aGGGGGGCggUCCGG--GCCUgCGggGu -3'
miRNA:   3'- -CCCCCUGgaAGGCUggCGGGgGCuuC- -5'
9153 3' -61.6 NC_002512.2 + 226742 0.66 0.787986
Target:  5'- cGGcGGGACCgggcUCCGGCCGgacgaCgCGGAGg -3'
miRNA:   3'- -CC-CCCUGGa---AGGCUGGCgg---GgGCUUC- -5'
9153 3' -61.6 NC_002512.2 + 166021 0.66 0.787986
Target:  5'- cGGGGACgCgUUCGGCgGCCguUCCGggGu -3'
miRNA:   3'- cCCCCUG-GaAGGCUGgCGG--GGGCuuC- -5'
9153 3' -61.6 NC_002512.2 + 39955 0.66 0.787986
Target:  5'- aGGGGGAgCagUCG-CCGCCgagaCCGGAGc -3'
miRNA:   3'- -CCCCCUgGaaGGCuGGCGGg---GGCUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.