miRNA display CGI


Results 21 - 40 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9153 5' -57.1 NC_002512.2 + 49807 0.66 0.918636
Target:  5'- ---aUCGCGGACGAgaaacugCGgagacAGGGGGUCg -3'
miRNA:   3'- aagaAGCGCCUGCUa------GC-----UCCUCCGGg -5'
9153 5' -57.1 NC_002512.2 + 50103 0.7 0.751069
Target:  5'- ----aCGaCGGAcCGGUCGaAGGAGGCCg -3'
miRNA:   3'- aagaaGC-GCCU-GCUAGC-UCCUCCGGg -5'
9153 5' -57.1 NC_002512.2 + 64656 0.67 0.901219
Target:  5'- ---gUCGUGGAUcacGUCGcGGAGGUCCu -3'
miRNA:   3'- aagaAGCGCCUGc--UAGCuCCUCCGGG- -5'
9153 5' -57.1 NC_002512.2 + 73231 0.67 0.888524
Target:  5'- gUCgUCGCGGGCGAagguccccUCGAaGGGcaccGGCCg -3'
miRNA:   3'- aAGaAGCGCCUGCU--------AGCU-CCU----CCGGg -5'
9153 5' -57.1 NC_002512.2 + 74830 0.69 0.821542
Target:  5'- -----gGCGGACGAacaacucgguUCGAGG-GGCCUc -3'
miRNA:   3'- aagaagCGCCUGCU----------AGCUCCuCCGGG- -5'
9153 5' -57.1 NC_002512.2 + 74903 0.72 0.674383
Target:  5'- cUCgUCGC-GACGGaCGcGGAGGCCCg -3'
miRNA:   3'- aAGaAGCGcCUGCUaGCuCCUCCGGG- -5'
9153 5' -57.1 NC_002512.2 + 77091 0.72 0.664569
Target:  5'- gUCgcCGCGGACcucCGAgacGGAGGCCCg -3'
miRNA:   3'- aAGaaGCGCCUGcuaGCU---CCUCCGGG- -5'
9153 5' -57.1 NC_002512.2 + 77186 1.08 0.004008
Target:  5'- aUUCUUCGCGGACGAUCGAGGAGGCCCc -3'
miRNA:   3'- -AAGAAGCGCCUGCUAGCUCCUCCGGG- -5'
9153 5' -57.1 NC_002512.2 + 77313 0.67 0.888524
Target:  5'- -gUUUCGCGaGGCGA-CGGGGucucGGGCUCc -3'
miRNA:   3'- aaGAAGCGC-CUGCUaGCUCC----UCCGGG- -5'
9153 5' -57.1 NC_002512.2 + 77554 0.7 0.787343
Target:  5'- ---gUCGCGGACGG-CG-GGucGCCCa -3'
miRNA:   3'- aagaAGCGCCUGCUaGCuCCucCGGG- -5'
9153 5' -57.1 NC_002512.2 + 78848 0.66 0.924
Target:  5'- ----cCGCGuGACGGgccgccgccUCGAGGuGGCUCg -3'
miRNA:   3'- aagaaGCGC-CUGCU---------AGCUCCuCCGGG- -5'
9153 5' -57.1 NC_002512.2 + 81428 0.66 0.943238
Target:  5'- ---gUCGCGGcucCGuccCGcGGGGGGCCCg -3'
miRNA:   3'- aagaAGCGCCu--GCua-GC-UCCUCCGGG- -5'
9153 5' -57.1 NC_002512.2 + 83372 0.67 0.881859
Target:  5'- ----aUGUGGACGAUCGucgcGGAGaCCCg -3'
miRNA:   3'- aagaaGCGCCUGCUAGCu---CCUCcGGG- -5'
9153 5' -57.1 NC_002512.2 + 83883 0.69 0.803877
Target:  5'- ---gUCGCGGuCGAucgcgucgUCGGGGAagagcugGGCCCa -3'
miRNA:   3'- aagaAGCGCCuGCU--------AGCUCCU-------CCGGG- -5'
9153 5' -57.1 NC_002512.2 + 85545 0.69 0.813214
Target:  5'- -aCggCGCuGGCGGggcUCGAGGAGGCgCg -3'
miRNA:   3'- aaGaaGCGcCUGCU---AGCUCCUCCGgG- -5'
9153 5' -57.1 NC_002512.2 + 86224 0.76 0.463087
Target:  5'- -gCUUCGgGGAgGGggaCGAGGAGGaCCCg -3'
miRNA:   3'- aaGAAGCgCCUgCUa--GCUCCUCC-GGG- -5'
9153 5' -57.1 NC_002512.2 + 86643 0.67 0.907244
Target:  5'- -gCggUGUGGugGAUCGcGGuGGCCg -3'
miRNA:   3'- aaGaaGCGCCugCUAGCuCCuCCGGg -5'
9153 5' -57.1 NC_002512.2 + 86669 0.67 0.907244
Target:  5'- gUCcgaGCGGACGGcgcgCGAGGGGGacggcaCCa -3'
miRNA:   3'- aAGaagCGCCUGCUa---GCUCCUCCg-----GG- -5'
9153 5' -57.1 NC_002512.2 + 87821 0.71 0.732316
Target:  5'- -----gGCGGGCGGUCGGaGGGGCCg -3'
miRNA:   3'- aagaagCGCCUGCUAGCUcCUCCGGg -5'
9153 5' -57.1 NC_002512.2 + 89870 0.68 0.867916
Target:  5'- gUCUUCGgGGACGGgaCGGGGAuGUCg -3'
miRNA:   3'- aAGAAGCgCCUGCUa-GCUCCUcCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.