miRNA display CGI


Results 1 - 20 of 135 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9153 5' -57.1 NC_002512.2 + 67 0.74 0.518337
Target:  5'- gUCggUCGCGGGCG--CGAGGAGGCg- -3'
miRNA:   3'- aAGa-AGCGCCUGCuaGCUCCUCCGgg -5'
9153 5' -57.1 NC_002512.2 + 2313 0.68 0.867916
Target:  5'- cUCUgcugCGCcGGCGGUCc-GGAGGCCUc -3'
miRNA:   3'- aAGAa---GCGcCUGCUAGcuCCUCCGGG- -5'
9153 5' -57.1 NC_002512.2 + 3666 0.68 0.874989
Target:  5'- ---cUCGCGGccgACGGUCc-GGAGGUCCu -3'
miRNA:   3'- aagaAGCGCC---UGCUAGcuCCUCCGGG- -5'
9153 5' -57.1 NC_002512.2 + 10450 0.66 0.943238
Target:  5'- ----aCGgGGGCGcg-GAGGAGGCCg -3'
miRNA:   3'- aagaaGCgCCUGCuagCUCCUCCGGg -5'
9153 5' -57.1 NC_002512.2 + 11282 0.66 0.934062
Target:  5'- cUUCgagucCGCGGGCGAgacccCGGGGAGaCCUc -3'
miRNA:   3'- -AAGaa---GCGCCUGCUa----GCUCCUCcGGG- -5'
9153 5' -57.1 NC_002512.2 + 11365 0.7 0.760304
Target:  5'- cUgUUCGCgucGGACGA-CGAGG-GGUCCg -3'
miRNA:   3'- aAgAAGCG---CCUGCUaGCUCCuCCGGG- -5'
9153 5' -57.1 NC_002512.2 + 11397 0.66 0.943238
Target:  5'- cUCggaCGCGGACGAcccgcgggaCGAGGAgaugaccgcGGUCCg -3'
miRNA:   3'- aAGaa-GCGCCUGCUa--------GCUCCU---------CCGGG- -5'
9153 5' -57.1 NC_002512.2 + 16868 0.67 0.881859
Target:  5'- -----gGCGGACGcaccUCGAGaGGGCCCc -3'
miRNA:   3'- aagaagCGCCUGCu---AGCUCcUCCGGG- -5'
9153 5' -57.1 NC_002512.2 + 17439 0.7 0.787342
Target:  5'- cUCcUCGCGG-CGGUCGcGGccggccGGCCCg -3'
miRNA:   3'- aAGaAGCGCCuGCUAGCuCCu-----CCGGG- -5'
9153 5' -57.1 NC_002512.2 + 24200 0.68 0.877761
Target:  5'- gUCgUUCGacaGGACGGUgacgccggagcugucCGAGGcgucGGGCCCg -3'
miRNA:   3'- aAG-AAGCg--CCUGCUA---------------GCUCC----UCCGGG- -5'
9153 5' -57.1 NC_002512.2 + 25288 0.66 0.93358
Target:  5'- cUCcUCGCuGGugGAguccaauccccagUCGGGGucGCCCc -3'
miRNA:   3'- aAGaAGCG-CCugCU-------------AGCUCCucCGGG- -5'
9153 5' -57.1 NC_002512.2 + 28896 0.66 0.918636
Target:  5'- cUgUUCGCGGACGAga-AGGuGGaCCUg -3'
miRNA:   3'- aAgAAGCGCCUGCUagcUCCuCC-GGG- -5'
9153 5' -57.1 NC_002512.2 + 29740 0.76 0.454176
Target:  5'- ----cCGUGGcgGCGcgCGAGGGGGCCCg -3'
miRNA:   3'- aagaaGCGCC--UGCuaGCUCCUCCGGG- -5'
9153 5' -57.1 NC_002512.2 + 30261 0.76 0.448875
Target:  5'- gUCccCGCGGACGcgcggagccggcgccAUgGAGGAGGCCCc -3'
miRNA:   3'- aAGaaGCGCCUGC---------------UAgCUCCUCCGGG- -5'
9153 5' -57.1 NC_002512.2 + 30397 0.66 0.920808
Target:  5'- aUCcUCGCGGcccugACGGaCGGGGAcgcgggcgucgucgcGGCCCu -3'
miRNA:   3'- aAGaAGCGCC-----UGCUaGCUCCU---------------CCGGG- -5'
9153 5' -57.1 NC_002512.2 + 37660 0.78 0.340262
Target:  5'- aUCUcUCGCGGGCGAcgUCGAaGAGGCCg -3'
miRNA:   3'- aAGA-AGCGCCUGCU--AGCUcCUCCGGg -5'
9153 5' -57.1 NC_002512.2 + 38649 0.66 0.93876
Target:  5'- -cCUgucCGCGGGuac-CGAGGAGGCCg -3'
miRNA:   3'- aaGAa--GCGCCUgcuaGCUCCUCCGGg -5'
9153 5' -57.1 NC_002512.2 + 43103 0.7 0.787342
Target:  5'- ----gCGgGGACGGcUCGAGGgacagguuguAGGCCCg -3'
miRNA:   3'- aagaaGCgCCUGCU-AGCUCC----------UCCGGG- -5'
9153 5' -57.1 NC_002512.2 + 43599 0.73 0.585793
Target:  5'- ---gUCGCGGACGAggaCGcGGAGGCUg -3'
miRNA:   3'- aagaAGCGCCUGCUa--GCuCCUCCGGg -5'
9153 5' -57.1 NC_002512.2 + 45073 0.67 0.87982
Target:  5'- ---gUCGCGGcCGGcgCGGaagggucuccccgcGGAGGCCCg -3'
miRNA:   3'- aagaAGCGCCuGCUa-GCU--------------CCUCCGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.