miRNA display CGI


Results 1 - 20 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9153 5' -57.1 NC_002512.2 + 81428 0.66 0.943238
Target:  5'- ---gUCGCGGcucCGuccCGcGGGGGGCCCg -3'
miRNA:   3'- aagaAGCGCCu--GCua-GC-UCCUCCGGG- -5'
9153 5' -57.1 NC_002512.2 + 30397 0.66 0.920808
Target:  5'- aUCcUCGCGGcccugACGGaCGGGGAcgcgggcgucgucgcGGCCCu -3'
miRNA:   3'- aAGaAGCGCC-----UGCUaGCUCCU---------------CCGGG- -5'
9153 5' -57.1 NC_002512.2 + 179309 0.66 0.934062
Target:  5'- ----cCGCGGGCGG-CGAGGcGGGCa- -3'
miRNA:   3'- aagaaGCGCCUGCUaGCUCC-UCCGgg -5'
9153 5' -57.1 NC_002512.2 + 10450 0.66 0.943238
Target:  5'- ----aCGgGGGCGcg-GAGGAGGCCg -3'
miRNA:   3'- aagaaGCgCCUGCuagCUCCUCCGGg -5'
9153 5' -57.1 NC_002512.2 + 107856 0.66 0.924
Target:  5'- aUCUUCugucCGGACcg-CGuGGAGGCCg -3'
miRNA:   3'- aAGAAGc---GCCUGcuaGCuCCUCCGGg -5'
9153 5' -57.1 NC_002512.2 + 38649 0.66 0.93876
Target:  5'- -cCUgucCGCGGGuac-CGAGGAGGCCg -3'
miRNA:   3'- aaGAa--GCGCCUgcuaGCUCCUCCGGg -5'
9153 5' -57.1 NC_002512.2 + 226908 0.66 0.943238
Target:  5'- ----aCGCGGGaGGcCaAGGAGGCCCg -3'
miRNA:   3'- aagaaGCGCCUgCUaGcUCCUCCGGG- -5'
9153 5' -57.1 NC_002512.2 + 99622 0.66 0.93876
Target:  5'- cUCgUCGCGGuCG-UCGcccucGGAgGGCCCg -3'
miRNA:   3'- aAGaAGCGCCuGCuAGCu----CCU-CCGGG- -5'
9153 5' -57.1 NC_002512.2 + 11397 0.66 0.943238
Target:  5'- cUCggaCGCGGACGAcccgcgggaCGAGGAgaugaccgcGGUCCg -3'
miRNA:   3'- aAGaa-GCGCCUGCUa--------GCUCCU---------CCGGG- -5'
9153 5' -57.1 NC_002512.2 + 123023 0.66 0.934062
Target:  5'- ---cUCGUGcGCGA-CGAGGAGGUCg -3'
miRNA:   3'- aagaAGCGCcUGCUaGCUCCUCCGGg -5'
9153 5' -57.1 NC_002512.2 + 11282 0.66 0.934062
Target:  5'- cUUCgagucCGCGGGCGAgacccCGGGGAGaCCUc -3'
miRNA:   3'- -AAGaa---GCGCCUGCUa----GCUCCUCcGGG- -5'
9153 5' -57.1 NC_002512.2 + 78848 0.66 0.924
Target:  5'- ----cCGCGuGACGGgccgccgccUCGAGGuGGCUCg -3'
miRNA:   3'- aagaaGCGC-CUGCU---------AGCUCCuCCGGG- -5'
9153 5' -57.1 NC_002512.2 + 153636 0.66 0.93876
Target:  5'- -cCUUCgGCGGACGGgagCGGGGGcacGCUCc -3'
miRNA:   3'- aaGAAG-CGCCUGCUa--GCUCCUc--CGGG- -5'
9153 5' -57.1 NC_002512.2 + 94138 0.66 0.943238
Target:  5'- ----aCGCGGAUGAcgCGGcGGAGGCa- -3'
miRNA:   3'- aagaaGCGCCUGCUa-GCU-CCUCCGgg -5'
9153 5' -57.1 NC_002512.2 + 99899 0.66 0.918087
Target:  5'- ----gCGCGGcCcGUCGAGGgcgccggGGGCCCg -3'
miRNA:   3'- aagaaGCGCCuGcUAGCUCC-------UCCGGG- -5'
9153 5' -57.1 NC_002512.2 + 49807 0.66 0.918636
Target:  5'- ---aUCGCGGACGAgaaacugCGgagacAGGGGGUCg -3'
miRNA:   3'- aagaAGCGCCUGCUa------GC-----UCCUCCGGg -5'
9153 5' -57.1 NC_002512.2 + 28896 0.66 0.918636
Target:  5'- cUgUUCGCGGACGAga-AGGuGGaCCUg -3'
miRNA:   3'- aAgAAGCGCCUGCUagcUCCuCC-GGG- -5'
9153 5' -57.1 NC_002512.2 + 221607 0.66 0.934062
Target:  5'- gUCg--GUGGACGG-CGAGGAGGgagcggguccaCCCg -3'
miRNA:   3'- aAGaagCGCCUGCUaGCUCCUCC-----------GGG- -5'
9153 5' -57.1 NC_002512.2 + 199656 0.66 0.934062
Target:  5'- ----cCGCGGACGGagGAGGGGGa-- -3'
miRNA:   3'- aagaaGCGCCUGCUagCUCCUCCggg -5'
9153 5' -57.1 NC_002512.2 + 25288 0.66 0.93358
Target:  5'- cUCcUCGCuGGugGAguccaauccccagUCGGGGucGCCCc -3'
miRNA:   3'- aAGaAGCG-CCugCU-------------AGCUCCucCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.