Results 1 - 20 of 135 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9153 | 5' | -57.1 | NC_002512.2 | + | 77186 | 1.08 | 0.004008 |
Target: 5'- aUUCUUCGCGGACGAUCGAGGAGGCCCc -3' miRNA: 3'- -AAGAAGCGCCUGCUAGCUCCUCCGGG- -5' |
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9153 | 5' | -57.1 | NC_002512.2 | + | 94642 | 0.8 | 0.260256 |
Target: 5'- -gCggCGCGGACGAcggccUCGAGGcGGCCCg -3' miRNA: 3'- aaGaaGCGCCUGCU-----AGCUCCuCCGGG- -5' |
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9153 | 5' | -57.1 | NC_002512.2 | + | 37660 | 0.78 | 0.340262 |
Target: 5'- aUCUcUCGCGGGCGAcgUCGAaGAGGCCg -3' miRNA: 3'- aAGA-AGCGCCUGCU--AGCUcCUCCGGg -5' |
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9153 | 5' | -57.1 | NC_002512.2 | + | 86224 | 0.76 | 0.463087 |
Target: 5'- -gCUUCGgGGAgGGggaCGAGGAGGaCCCg -3' miRNA: 3'- aaGAAGCgCCUgCUa--GCUCCUCC-GGG- -5' |
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9153 | 5' | -57.1 | NC_002512.2 | + | 29740 | 0.76 | 0.454176 |
Target: 5'- ----cCGUGGcgGCGcgCGAGGGGGCCCg -3' miRNA: 3'- aagaaGCGCC--UGCuaGCUCCUCCGGG- -5' |
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9153 | 5' | -57.1 | NC_002512.2 | + | 30261 | 0.76 | 0.448875 |
Target: 5'- gUCccCGCGGACGcgcggagccggcgccAUgGAGGAGGCCCc -3' miRNA: 3'- aAGaaGCGCCUGC---------------UAgCUCCUCCGGG- -5' |
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9153 | 5' | -57.1 | NC_002512.2 | + | 67 | 0.74 | 0.518337 |
Target: 5'- gUCggUCGCGGGCG--CGAGGAGGCg- -3' miRNA: 3'- aAGa-AGCGCCUGCuaGCUCCUCCGgg -5' |
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9153 | 5' | -57.1 | NC_002512.2 | + | 130838 | 0.74 | 0.566278 |
Target: 5'- ----cCGCGGucgaguaccgGCGGUCGGGcGAGGCCCc -3' miRNA: 3'- aagaaGCGCC----------UGCUAGCUC-CUCCGGG- -5' |
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9153 | 5' | -57.1 | NC_002512.2 | + | 229471 | 0.74 | 0.518337 |
Target: 5'- gUCggUCGCGGGCG--CGAGGAGGCg- -3' miRNA: 3'- aAGa-AGCGCCUGCuaGCUCCUCCGgg -5' |
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9153 | 5' | -57.1 | NC_002512.2 | + | 189239 | 0.73 | 0.615281 |
Target: 5'- gUCgccgUCGCGGACGucaccGUCGGGGAgagguacgucgaGGUCCg -3' miRNA: 3'- aAGa---AGCGCCUGC-----UAGCUCCU------------CCGGG- -5' |
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9153 | 5' | -57.1 | NC_002512.2 | + | 181998 | 0.73 | 0.615281 |
Target: 5'- ---gUgGCGGACGuccUCGGGGucAGGCCCa -3' miRNA: 3'- aagaAgCGCCUGCu--AGCUCC--UCCGGG- -5' |
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9153 | 5' | -57.1 | NC_002512.2 | + | 166203 | 0.73 | 0.605431 |
Target: 5'- -cCUUCuuGGGCGG-CGAGGAGGgCCg -3' miRNA: 3'- aaGAAGcgCCUGCUaGCUCCUCCgGG- -5' |
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9153 | 5' | -57.1 | NC_002512.2 | + | 43599 | 0.73 | 0.585793 |
Target: 5'- ---gUCGCGGACGAggaCGcGGAGGCUg -3' miRNA: 3'- aagaAGCGCCUGCUa--GCuCCUCCGGg -5' |
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9153 | 5' | -57.1 | NC_002512.2 | + | 219864 | 0.73 | 0.615281 |
Target: 5'- ---aUCGCGGACGggUGAcGAGGCCg -3' miRNA: 3'- aagaAGCGCCUGCuaGCUcCUCCGGg -5' |
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9153 | 5' | -57.1 | NC_002512.2 | + | 109027 | 0.72 | 0.674384 |
Target: 5'- -gCgggCGgGGACGAggacCGGGGGGGCUCg -3' miRNA: 3'- aaGaa-GCgCCUGCUa---GCUCCUCCGGG- -5' |
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9153 | 5' | -57.1 | NC_002512.2 | + | 77091 | 0.72 | 0.664569 |
Target: 5'- gUCgcCGCGGACcucCGAgacGGAGGCCCg -3' miRNA: 3'- aAGaaGCGCCUGcuaGCU---CCUCCGGG- -5' |
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9153 | 5' | -57.1 | NC_002512.2 | + | 74903 | 0.72 | 0.674383 |
Target: 5'- cUCgUCGC-GACGGaCGcGGAGGCCCg -3' miRNA: 3'- aAGaAGCGcCUGCUaGCuCCUCCGGG- -5' |
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9153 | 5' | -57.1 | NC_002512.2 | + | 124559 | 0.72 | 0.63501 |
Target: 5'- ---cUCGUcGGCGAg-GAGGAGGCCCg -3' miRNA: 3'- aagaAGCGcCUGCUagCUCCUCCGGG- -5' |
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9153 | 5' | -57.1 | NC_002512.2 | + | 87821 | 0.71 | 0.732316 |
Target: 5'- -----gGCGGGCGGUCGGaGGGGCCg -3' miRNA: 3'- aagaagCGCCUGCUAGCUcCUCCGGg -5' |
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9153 | 5' | -57.1 | NC_002512.2 | + | 123400 | 0.71 | 0.722815 |
Target: 5'- gUUCUUCuCGGACGG-CGAGGcggucgAGGUCCc -3' miRNA: 3'- -AAGAAGcGCCUGCUaGCUCC------UCCGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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