miRNA display CGI


Results 1 - 20 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9153 5' -57.1 NC_002512.2 + 155396 0.7 0.787342
Target:  5'- -----gGCGGGCGAUCGcGGAGGggaCCg -3'
miRNA:   3'- aagaagCGCCUGCUAGCuCCUCCg--GG- -5'
9153 5' -57.1 NC_002512.2 + 87821 0.71 0.732316
Target:  5'- -----gGCGGGCGGUCGGaGGGGCCg -3'
miRNA:   3'- aagaagCGCCUGCUAGCUcCUCCGGg -5'
9153 5' -57.1 NC_002512.2 + 152735 0.7 0.741737
Target:  5'- -gCUUCGgGGGCGGUCG-GaAGGUCCc -3'
miRNA:   3'- aaGAAGCgCCUGCUAGCuCcUCCGGG- -5'
9153 5' -57.1 NC_002512.2 + 50103 0.7 0.751069
Target:  5'- ----aCGaCGGAcCGGUCGaAGGAGGCCg -3'
miRNA:   3'- aagaaGC-GCCU-GCUAGC-UCCUCCGGg -5'
9153 5' -57.1 NC_002512.2 + 102518 0.7 0.751069
Target:  5'- ---gUCGCGGcCG-UCGGGGgucAGGCCCc -3'
miRNA:   3'- aagaAGCGCCuGCuAGCUCC---UCCGGG- -5'
9153 5' -57.1 NC_002512.2 + 11365 0.7 0.760304
Target:  5'- cUgUUCGCgucGGACGA-CGAGG-GGUCCg -3'
miRNA:   3'- aAgAAGCG---CCUGCUaGCUCCuCCGGG- -5'
9153 5' -57.1 NC_002512.2 + 116575 0.7 0.769433
Target:  5'- cUUCUaCGUcuacuacaccugGGGCGAgggCG-GGAGGCCCg -3'
miRNA:   3'- -AAGAaGCG------------CCUGCUa--GCuCCUCCGGG- -5'
9153 5' -57.1 NC_002512.2 + 43103 0.7 0.787342
Target:  5'- ----gCGgGGACGGcUCGAGGgacagguuguAGGCCCg -3'
miRNA:   3'- aagaaGCgCCUGCU-AGCUCC----------UCCGGG- -5'
9153 5' -57.1 NC_002512.2 + 140593 0.7 0.787342
Target:  5'- -----gGCGGACGcugCGAGGuGGUCCg -3'
miRNA:   3'- aagaagCGCCUGCua-GCUCCuCCGGG- -5'
9153 5' -57.1 NC_002512.2 + 123400 0.71 0.722815
Target:  5'- gUUCUUCuCGGACGG-CGAGGcggucgAGGUCCc -3'
miRNA:   3'- -AAGAAGcGCCUGCUaGCUCC------UCCGGG- -5'
9153 5' -57.1 NC_002512.2 + 107079 0.71 0.702635
Target:  5'- gUUC-UCGgGGGCGGUCGGgucggucGGcGGCCCg -3'
miRNA:   3'- -AAGaAGCgCCUGCUAGCU-------CCuCCGGG- -5'
9153 5' -57.1 NC_002512.2 + 74903 0.72 0.674383
Target:  5'- cUCgUCGC-GACGGaCGcGGAGGCCCg -3'
miRNA:   3'- aAGaAGCGcCUGCUaGCuCCUCCGGG- -5'
9153 5' -57.1 NC_002512.2 + 30261 0.76 0.448875
Target:  5'- gUCccCGCGGACGcgcggagccggcgccAUgGAGGAGGCCCc -3'
miRNA:   3'- aAGaaGCGCCUGC---------------UAgCUCCUCCGGG- -5'
9153 5' -57.1 NC_002512.2 + 29740 0.76 0.454176
Target:  5'- ----cCGUGGcgGCGcgCGAGGGGGCCCg -3'
miRNA:   3'- aagaaGCGCC--UGCuaGCUCCUCCGGG- -5'
9153 5' -57.1 NC_002512.2 + 86224 0.76 0.463087
Target:  5'- -gCUUCGgGGAgGGggaCGAGGAGGaCCCg -3'
miRNA:   3'- aaGAAGCgCCUgCUa--GCUCCUCC-GGG- -5'
9153 5' -57.1 NC_002512.2 + 67 0.74 0.518337
Target:  5'- gUCggUCGCGGGCG--CGAGGAGGCg- -3'
miRNA:   3'- aAGa-AGCGCCUGCuaGCUCCUCCGgg -5'
9153 5' -57.1 NC_002512.2 + 229471 0.74 0.518337
Target:  5'- gUCggUCGCGGGCG--CGAGGAGGCg- -3'
miRNA:   3'- aAGa-AGCGCCUGCuaGCUCCUCCGgg -5'
9153 5' -57.1 NC_002512.2 + 130838 0.74 0.566278
Target:  5'- ----cCGCGGucgaguaccgGCGGUCGGGcGAGGCCCc -3'
miRNA:   3'- aagaaGCGCC----------UGCUAGCUC-CUCCGGG- -5'
9153 5' -57.1 NC_002512.2 + 43599 0.73 0.585793
Target:  5'- ---gUCGCGGACGAggaCGcGGAGGCUg -3'
miRNA:   3'- aagaAGCGCCUGCUa--GCuCCUCCGGg -5'
9153 5' -57.1 NC_002512.2 + 124559 0.72 0.63501
Target:  5'- ---cUCGUcGGCGAg-GAGGAGGCCCg -3'
miRNA:   3'- aagaAGCGcCUGCUagCUCCUCCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.