miRNA display CGI


Results 1 - 20 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9153 5' -57.1 NC_002512.2 + 77186 1.08 0.004008
Target:  5'- aUUCUUCGCGGACGAUCGAGGAGGCCCc -3'
miRNA:   3'- -AAGAAGCGCCUGCUAGCUCCUCCGGG- -5'
9153 5' -57.1 NC_002512.2 + 94642 0.8 0.260256
Target:  5'- -gCggCGCGGACGAcggccUCGAGGcGGCCCg -3'
miRNA:   3'- aaGaaGCGCCUGCU-----AGCUCCuCCGGG- -5'
9153 5' -57.1 NC_002512.2 + 37660 0.78 0.340262
Target:  5'- aUCUcUCGCGGGCGAcgUCGAaGAGGCCg -3'
miRNA:   3'- aAGA-AGCGCCUGCU--AGCUcCUCCGGg -5'
9153 5' -57.1 NC_002512.2 + 30261 0.76 0.448875
Target:  5'- gUCccCGCGGACGcgcggagccggcgccAUgGAGGAGGCCCc -3'
miRNA:   3'- aAGaaGCGCCUGC---------------UAgCUCCUCCGGG- -5'
9153 5' -57.1 NC_002512.2 + 29740 0.76 0.454176
Target:  5'- ----cCGUGGcgGCGcgCGAGGGGGCCCg -3'
miRNA:   3'- aagaaGCGCC--UGCuaGCUCCUCCGGG- -5'
9153 5' -57.1 NC_002512.2 + 86224 0.76 0.463087
Target:  5'- -gCUUCGgGGAgGGggaCGAGGAGGaCCCg -3'
miRNA:   3'- aaGAAGCgCCUgCUa--GCUCCUCC-GGG- -5'
9153 5' -57.1 NC_002512.2 + 67 0.74 0.518337
Target:  5'- gUCggUCGCGGGCG--CGAGGAGGCg- -3'
miRNA:   3'- aAGa-AGCGCCUGCuaGCUCCUCCGgg -5'
9153 5' -57.1 NC_002512.2 + 229471 0.74 0.518337
Target:  5'- gUCggUCGCGGGCG--CGAGGAGGCg- -3'
miRNA:   3'- aAGa-AGCGCCUGCuaGCUCCUCCGgg -5'
9153 5' -57.1 NC_002512.2 + 130838 0.74 0.566278
Target:  5'- ----cCGCGGucgaguaccgGCGGUCGGGcGAGGCCCc -3'
miRNA:   3'- aagaaGCGCC----------UGCUAGCUC-CUCCGGG- -5'
9153 5' -57.1 NC_002512.2 + 43599 0.73 0.585793
Target:  5'- ---gUCGCGGACGAggaCGcGGAGGCUg -3'
miRNA:   3'- aagaAGCGCCUGCUa--GCuCCUCCGGg -5'
9153 5' -57.1 NC_002512.2 + 166203 0.73 0.605431
Target:  5'- -cCUUCuuGGGCGG-CGAGGAGGgCCg -3'
miRNA:   3'- aaGAAGcgCCUGCUaGCUCCUCCgGG- -5'
9153 5' -57.1 NC_002512.2 + 219864 0.73 0.615281
Target:  5'- ---aUCGCGGACGggUGAcGAGGCCg -3'
miRNA:   3'- aagaAGCGCCUGCuaGCUcCUCCGGg -5'
9153 5' -57.1 NC_002512.2 + 189239 0.73 0.615281
Target:  5'- gUCgccgUCGCGGACGucaccGUCGGGGAgagguacgucgaGGUCCg -3'
miRNA:   3'- aAGa---AGCGCCUGC-----UAGCUCCU------------CCGGG- -5'
9153 5' -57.1 NC_002512.2 + 181998 0.73 0.615281
Target:  5'- ---gUgGCGGACGuccUCGGGGucAGGCCCa -3'
miRNA:   3'- aagaAgCGCCUGCu--AGCUCC--UCCGGG- -5'
9153 5' -57.1 NC_002512.2 + 124559 0.72 0.63501
Target:  5'- ---cUCGUcGGCGAg-GAGGAGGCCCg -3'
miRNA:   3'- aagaAGCGcCUGCUagCUCCUCCGGG- -5'
9153 5' -57.1 NC_002512.2 + 77091 0.72 0.664569
Target:  5'- gUCgcCGCGGACcucCGAgacGGAGGCCCg -3'
miRNA:   3'- aAGaaGCGCCUGcuaGCU---CCUCCGGG- -5'
9153 5' -57.1 NC_002512.2 + 74903 0.72 0.674383
Target:  5'- cUCgUCGC-GACGGaCGcGGAGGCCCg -3'
miRNA:   3'- aAGaAGCGcCUGCUaGCuCCUCCGGG- -5'
9153 5' -57.1 NC_002512.2 + 109027 0.72 0.674384
Target:  5'- -gCgggCGgGGACGAggacCGGGGGGGCUCg -3'
miRNA:   3'- aaGaa-GCgCCUGCUa---GCUCCUCCGGG- -5'
9153 5' -57.1 NC_002512.2 + 225398 0.71 0.684166
Target:  5'- cUCUUCGgGGACGGcgccggggUCGGGGucggguugGGGCCg -3'
miRNA:   3'- aAGAAGCgCCUGCU--------AGCUCC--------UCCGGg -5'
9153 5' -57.1 NC_002512.2 + 93119 0.71 0.693908
Target:  5'- gUUCUUCGUgcuGGACGG-CGAGGAcGCCa -3'
miRNA:   3'- -AAGAAGCG---CCUGCUaGCUCCUcCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.