Results 1 - 20 of 135 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9153 | 5' | -57.1 | NC_002512.2 | + | 226908 | 0.66 | 0.943238 |
Target: 5'- ----aCGCGGGaGGcCaAGGAGGCCCg -3' miRNA: 3'- aagaaGCGCCUgCUaGcUCCUCCGGG- -5' |
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9153 | 5' | -57.1 | NC_002512.2 | + | 198672 | 0.66 | 0.918636 |
Target: 5'- -----aGCGuGGCGA-CG-GGGGGCCCg -3' miRNA: 3'- aagaagCGC-CUGCUaGCuCCUCCGGG- -5' |
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9153 | 5' | -57.1 | NC_002512.2 | + | 208367 | 0.67 | 0.91305 |
Target: 5'- ----gUGCGuuucGACGA-CGAGGuGGCCCg -3' miRNA: 3'- aagaaGCGC----CUGCUaGCUCCuCCGGG- -5' |
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9153 | 5' | -57.1 | NC_002512.2 | + | 77186 | 1.08 | 0.004008 |
Target: 5'- aUUCUUCGCGGACGAUCGAGGAGGCCCc -3' miRNA: 3'- -AAGAAGCGCCUGCUAGCUCCUCCGGG- -5' |
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9153 | 5' | -57.1 | NC_002512.2 | + | 199656 | 0.66 | 0.934062 |
Target: 5'- ----cCGCGGACGGagGAGGGGGa-- -3' miRNA: 3'- aagaaGCGCCUGCUagCUCCUCCggg -5' |
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9153 | 5' | -57.1 | NC_002512.2 | + | 179309 | 0.66 | 0.934062 |
Target: 5'- ----cCGCGGGCGG-CGAGGcGGGCa- -3' miRNA: 3'- aagaaGCGCCUGCUaGCUCC-UCCGgg -5' |
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9153 | 5' | -57.1 | NC_002512.2 | + | 227355 | 0.66 | 0.934062 |
Target: 5'- ----aCG-GGACG---GAGGAGGCCCg -3' miRNA: 3'- aagaaGCgCCUGCuagCUCCUCCGGG- -5' |
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9153 | 5' | -57.1 | NC_002512.2 | + | 224398 | 0.66 | 0.934062 |
Target: 5'- -cCggCGCGGACGcgCGccacGAGGUCCc -3' miRNA: 3'- aaGaaGCGCCUGCuaGCuc--CUCCGGG- -5' |
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9153 | 5' | -57.1 | NC_002512.2 | + | 167224 | 0.66 | 0.93358 |
Target: 5'- gUCUUCGuCGGcuuccgcGgGAUCGGGcgaGAGGUCCu -3' miRNA: 3'- aAGAAGC-GCC-------UgCUAGCUC---CUCCGGG- -5' |
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9153 | 5' | -57.1 | NC_002512.2 | + | 226466 | 0.66 | 0.918636 |
Target: 5'- ----cCGCGaGGCGG--GAGGAGGCCg -3' miRNA: 3'- aagaaGCGC-CUGCUagCUCCUCCGGg -5' |
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9153 | 5' | -57.1 | NC_002512.2 | + | 129186 | 0.66 | 0.929142 |
Target: 5'- ----aCGgGGACGcugCgGAGGAGGCCg -3' miRNA: 3'- aagaaGCgCCUGCua-G-CUCCUCCGGg -5' |
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9153 | 5' | -57.1 | NC_002512.2 | + | 216575 | 0.66 | 0.934062 |
Target: 5'- -----gGCGGGCcagCGAGGccAGGCCCu -3' miRNA: 3'- aagaagCGCCUGcuaGCUCC--UCCGGG- -5' |
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9153 | 5' | -57.1 | NC_002512.2 | + | 94138 | 0.66 | 0.943238 |
Target: 5'- ----aCGCGGAUGAcgCGGcGGAGGCa- -3' miRNA: 3'- aagaaGCGCCUGCUa-GCU-CCUCCGgg -5' |
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9153 | 5' | -57.1 | NC_002512.2 | + | 211767 | 0.66 | 0.924 |
Target: 5'- ----cUGCGGGaGGaCGuGGAGGCCCg -3' miRNA: 3'- aagaaGCGCCUgCUaGCuCCUCCGGG- -5' |
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9153 | 5' | -57.1 | NC_002512.2 | + | 99622 | 0.66 | 0.93876 |
Target: 5'- cUCgUCGCGGuCG-UCGcccucGGAgGGCCCg -3' miRNA: 3'- aAGaAGCGCCuGCuAGCu----CCU-CCGGG- -5' |
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9153 | 5' | -57.1 | NC_002512.2 | + | 101885 | 0.66 | 0.934062 |
Target: 5'- ----cCGCGGGCGAaagcgCGGGGAcGCCg -3' miRNA: 3'- aagaaGCGCCUGCUa----GCUCCUcCGGg -5' |
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9153 | 5' | -57.1 | NC_002512.2 | + | 182953 | 0.66 | 0.918636 |
Target: 5'- ---gUUGCGGugGAugaagUCGAaguGGuAGGCCCc -3' miRNA: 3'- aagaAGCGCCugCU-----AGCU---CC-UCCGGG- -5' |
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9153 | 5' | -57.1 | NC_002512.2 | + | 171735 | 0.67 | 0.91305 |
Target: 5'- ---aUCG-GGACG-UCGAGcucGGGGCCCu -3' miRNA: 3'- aagaAGCgCCUGCuAGCUC---CUCCGGG- -5' |
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9153 | 5' | -57.1 | NC_002512.2 | + | 221607 | 0.66 | 0.934062 |
Target: 5'- gUCg--GUGGACGG-CGAGGAGGgagcggguccaCCCg -3' miRNA: 3'- aAGaagCGCCUGCUaGCUCCUCC-----------GGG- -5' |
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9153 | 5' | -57.1 | NC_002512.2 | + | 161189 | 0.66 | 0.934062 |
Target: 5'- -cCUggUGgGGACGGUgUGccuGGAGGCCCu -3' miRNA: 3'- aaGAa-GCgCCUGCUA-GCu--CCUCCGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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