miRNA display CGI


Results 1 - 20 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9153 5' -57.1 NC_002512.2 + 229471 0.74 0.518337
Target:  5'- gUCggUCGCGGGCG--CGAGGAGGCg- -3'
miRNA:   3'- aAGa-AGCGCCUGCuaGCUCCUCCGgg -5'
9153 5' -57.1 NC_002512.2 + 227959 0.67 0.91305
Target:  5'- ----gCGCGGGgGAgccggaGAGGAgGGCCCc -3'
miRNA:   3'- aagaaGCGCCUgCUag----CUCCU-CCGGG- -5'
9153 5' -57.1 NC_002512.2 + 227355 0.66 0.934062
Target:  5'- ----aCG-GGACG---GAGGAGGCCCg -3'
miRNA:   3'- aagaaGCgCCUGCuagCUCCUCCGGG- -5'
9153 5' -57.1 NC_002512.2 + 226908 0.66 0.943238
Target:  5'- ----aCGCGGGaGGcCaAGGAGGCCCg -3'
miRNA:   3'- aagaaGCGCCUgCUaGcUCCUCCGGG- -5'
9153 5' -57.1 NC_002512.2 + 226579 0.69 0.821542
Target:  5'- ---gUgGCGGAUGG-CGAGGAGGCa- -3'
miRNA:   3'- aagaAgCGCCUGCUaGCUCCUCCGgg -5'
9153 5' -57.1 NC_002512.2 + 226466 0.66 0.918636
Target:  5'- ----cCGCGaGGCGG--GAGGAGGCCg -3'
miRNA:   3'- aagaaGCGC-CUGCUagCUCCUCCGGg -5'
9153 5' -57.1 NC_002512.2 + 225805 0.67 0.907244
Target:  5'- ----cCGCGGGCGGcCG-GGuGGCCUg -3'
miRNA:   3'- aagaaGCGCCUGCUaGCuCCuCCGGG- -5'
9153 5' -57.1 NC_002512.2 + 225561 0.68 0.867917
Target:  5'- cUUCUUCG-GcGACGAggccgaccUCGAGGGGcGCCg -3'
miRNA:   3'- -AAGAAGCgC-CUGCU--------AGCUCCUC-CGGg -5'
9153 5' -57.1 NC_002512.2 + 225525 0.68 0.845539
Target:  5'- -gCUUCGCGGACGGgacggCG-GGAGcGCg- -3'
miRNA:   3'- aaGAAGCGCCUGCUa----GCuCCUC-CGgg -5'
9153 5' -57.1 NC_002512.2 + 225398 0.71 0.684166
Target:  5'- cUCUUCGgGGACGGcgccggggUCGGGGucggguugGGGCCg -3'
miRNA:   3'- aAGAAGCgCCUGCU--------AGCUCC--------UCCGGg -5'
9153 5' -57.1 NC_002512.2 + 224398 0.66 0.934062
Target:  5'- -cCggCGCGGACGcgCGccacGAGGUCCc -3'
miRNA:   3'- aaGaaGCGCCUGCuaGCuc--CUCCGGG- -5'
9153 5' -57.1 NC_002512.2 + 223912 0.69 0.824829
Target:  5'- -gCggCGCGGGCGAgaggucgagccggaCGGGGAGGUCg -3'
miRNA:   3'- aaGaaGCGCCUGCUa-------------GCUCCUCCGGg -5'
9153 5' -57.1 NC_002512.2 + 221607 0.66 0.934062
Target:  5'- gUCg--GUGGACGG-CGAGGAGGgagcggguccaCCCg -3'
miRNA:   3'- aAGaagCGCCUGCUaGCUCCUCC-----------GGG- -5'
9153 5' -57.1 NC_002512.2 + 221343 0.69 0.837711
Target:  5'- cUCgacCGCGGGagaaGAUgGAGGAGcGUCCa -3'
miRNA:   3'- aAGaa-GCGCCUg---CUAgCUCCUC-CGGG- -5'
9153 5' -57.1 NC_002512.2 + 220075 0.69 0.836125
Target:  5'- cUCUggCGCGGAUccucaccuccuUCGAGGAGGUCg -3'
miRNA:   3'- aAGAa-GCGCCUGcu---------AGCUCCUCCGGg -5'
9153 5' -57.1 NC_002512.2 + 219864 0.73 0.615281
Target:  5'- ---aUCGCGGACGggUGAcGAGGCCg -3'
miRNA:   3'- aagaAGCGCCUGCuaGCUcCUCCGGg -5'
9153 5' -57.1 NC_002512.2 + 219816 0.68 0.872888
Target:  5'- ----gCGCGGGgcgcgacaggggguCGGUCGGGGGguccGGCCCg -3'
miRNA:   3'- aagaaGCGCCU--------------GCUAGCUCCU----CCGGG- -5'
9153 5' -57.1 NC_002512.2 + 216575 0.66 0.934062
Target:  5'- -----gGCGGGCcagCGAGGccAGGCCCu -3'
miRNA:   3'- aagaagCGCCUGcuaGCUCC--UCCGGG- -5'
9153 5' -57.1 NC_002512.2 + 214829 0.71 0.713241
Target:  5'- ---gUCGCGGugACGAucaugaugcgcuUCGAccuGGAGGCCCa -3'
miRNA:   3'- aagaAGCGCC--UGCU------------AGCU---CCUCCGGG- -5'
9153 5' -57.1 NC_002512.2 + 212997 0.67 0.907244
Target:  5'- gUCgcCGCGGcCG-UCGGGcccGGGGCCCu -3'
miRNA:   3'- aAGaaGCGCCuGCuAGCUC---CUCCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.