miRNA display CGI


Results 41 - 60 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9153 5' -57.1 NC_002512.2 + 86643 0.67 0.907244
Target:  5'- -gCggUGUGGugGAUCGcGGuGGCCg -3'
miRNA:   3'- aaGaaGCGCCugCUAGCuCCuCCGGg -5'
9153 5' -57.1 NC_002512.2 + 149835 0.67 0.901219
Target:  5'- gUUCgcgUCGCGGACGGagaUGGGGAucuuuuucacgGGUCCc -3'
miRNA:   3'- -AAGa--AGCGCCUGCUa--GCUCCU-----------CCGGG- -5'
9153 5' -57.1 NC_002512.2 + 145344 0.67 0.901219
Target:  5'- uUUCUUCGUagaaaagaaaGACGAagcgCGAGGGGGCgCg -3'
miRNA:   3'- -AAGAAGCGc---------CUGCUa---GCUCCUCCGgG- -5'
9153 5' -57.1 NC_002512.2 + 64656 0.67 0.901219
Target:  5'- ---gUCGUGGAUcacGUCGcGGAGGUCCu -3'
miRNA:   3'- aagaAGCGCCUGc--UAGCuCCUCCGGG- -5'
9153 5' -57.1 NC_002512.2 + 146794 0.67 0.901219
Target:  5'- ----cCGcCGGACccg-GAGGAGGCCCg -3'
miRNA:   3'- aagaaGC-GCCUGcuagCUCCUCCGGG- -5'
9153 5' -57.1 NC_002512.2 + 102313 0.67 0.901219
Target:  5'- ---gUCGCGGACGGUCcgucGGGCCUc -3'
miRNA:   3'- aagaAGCGCCUGCUAGcuccUCCGGG- -5'
9153 5' -57.1 NC_002512.2 + 197998 0.67 0.901219
Target:  5'- gUCUUCGCGaGCGggCGAcggacGGGGGCg- -3'
miRNA:   3'- aAGAAGCGCcUGCuaGCU-----CCUCCGgg -5'
9153 5' -57.1 NC_002512.2 + 196007 0.67 0.894978
Target:  5'- cUCUccgugCGCGGACGcgaaGGGGGGGaCCg -3'
miRNA:   3'- aAGAa----GCGCCUGCuag-CUCCUCCgGG- -5'
9153 5' -57.1 NC_002512.2 + 164649 0.67 0.894978
Target:  5'- -----gGCGG-CGAUCGGGGuGGCUa -3'
miRNA:   3'- aagaagCGCCuGCUAGCUCCuCCGGg -5'
9153 5' -57.1 NC_002512.2 + 102507 0.67 0.894978
Target:  5'- -----gGCGGACGGggaggacgagGAGGAGGCCa -3'
miRNA:   3'- aagaagCGCCUGCUag--------CUCCUCCGGg -5'
9153 5' -57.1 NC_002512.2 + 73231 0.67 0.888524
Target:  5'- gUCgUCGCGGGCGAagguccccUCGAaGGGcaccGGCCg -3'
miRNA:   3'- aAGaAGCGCCUGCU--------AGCU-CCU----CCGGg -5'
9153 5' -57.1 NC_002512.2 + 77313 0.67 0.888524
Target:  5'- -gUUUCGCGaGGCGA-CGGGGucucGGGCUCc -3'
miRNA:   3'- aaGAAGCGC-CUGCUaGCUCC----UCCGGG- -5'
9153 5' -57.1 NC_002512.2 + 100474 0.67 0.888524
Target:  5'- gUUCUcggUCGUGGccCGGaccUUGGGGAGGCCg -3'
miRNA:   3'- -AAGA---AGCGCCu-GCU---AGCUCCUCCGGg -5'
9153 5' -57.1 NC_002512.2 + 158909 0.67 0.881859
Target:  5'- cUCggUCGCGGcCGAguacggcuUCGGcGGGGGCgCCg -3'
miRNA:   3'- aAGa-AGCGCCuGCU--------AGCU-CCUCCG-GG- -5'
9153 5' -57.1 NC_002512.2 + 16868 0.67 0.881859
Target:  5'- -----gGCGGACGcaccUCGAGaGGGCCCc -3'
miRNA:   3'- aagaagCGCCUGCu---AGCUCcUCCGGG- -5'
9153 5' -57.1 NC_002512.2 + 139194 0.67 0.881859
Target:  5'- ----aCGCcGACGccGUCGAGGAccuGGCCCu -3'
miRNA:   3'- aagaaGCGcCUGC--UAGCUCCU---CCGGG- -5'
9153 5' -57.1 NC_002512.2 + 83372 0.67 0.881859
Target:  5'- ----aUGUGGACGAUCGucgcGGAGaCCCg -3'
miRNA:   3'- aagaaGCGCCUGCUAGCu---CCUCcGGG- -5'
9153 5' -57.1 NC_002512.2 + 145787 0.67 0.881859
Target:  5'- ----cCGCGGGaGGagGuGGAGGCCCg -3'
miRNA:   3'- aagaaGCGCCUgCUagCuCCUCCGGG- -5'
9153 5' -57.1 NC_002512.2 + 209187 0.67 0.881182
Target:  5'- aUCcUCGUGGACGAggagacCGAGcGGcgccugcGGCCCg -3'
miRNA:   3'- aAGaAGCGCCUGCUa-----GCUC-CU-------CCGGG- -5'
9153 5' -57.1 NC_002512.2 + 45073 0.67 0.87982
Target:  5'- ---gUCGCGGcCGGcgCGGaagggucuccccgcGGAGGCCCg -3'
miRNA:   3'- aagaAGCGCCuGCUa-GCU--------------CCUCCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.