miRNA display CGI


Results 21 - 40 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9153 5' -57.1 NC_002512.2 + 129186 0.66 0.929142
Target:  5'- ----aCGgGGACGcugCgGAGGAGGCCg -3'
miRNA:   3'- aagaaGCgCCUGCua-G-CUCCUCCGGg -5'
9153 5' -57.1 NC_002512.2 + 159382 0.66 0.929142
Target:  5'- --aUUCGCGGgucccGCGGcgUCGGGGcggaAGGUCCg -3'
miRNA:   3'- aagAAGCGCC-----UGCU--AGCUCC----UCCGGG- -5'
9153 5' -57.1 NC_002512.2 + 107856 0.66 0.924
Target:  5'- aUCUUCugucCGGACcg-CGuGGAGGCCg -3'
miRNA:   3'- aAGAAGc---GCCUGcuaGCuCCUCCGGg -5'
9153 5' -57.1 NC_002512.2 + 211767 0.66 0.924
Target:  5'- ----cUGCGGGaGGaCGuGGAGGCCCg -3'
miRNA:   3'- aagaaGCGCCUgCUaGCuCCUCCGGG- -5'
9153 5' -57.1 NC_002512.2 + 78848 0.66 0.924
Target:  5'- ----cCGCGuGACGGgccgccgccUCGAGGuGGCUCg -3'
miRNA:   3'- aagaaGCGC-CUGCU---------AGCUCCuCCGGG- -5'
9153 5' -57.1 NC_002512.2 + 30397 0.66 0.920808
Target:  5'- aUCcUCGCGGcccugACGGaCGGGGAcgcgggcgucgucgcGGCCCu -3'
miRNA:   3'- aAGaAGCGCC-----UGCUaGCUCCU---------------CCGGG- -5'
9153 5' -57.1 NC_002512.2 + 226466 0.66 0.918636
Target:  5'- ----cCGCGaGGCGG--GAGGAGGCCg -3'
miRNA:   3'- aagaaGCGC-CUGCUagCUCCUCCGGg -5'
9153 5' -57.1 NC_002512.2 + 198672 0.66 0.918636
Target:  5'- -----aGCGuGGCGA-CG-GGGGGCCCg -3'
miRNA:   3'- aagaagCGC-CUGCUaGCuCCUCCGGG- -5'
9153 5' -57.1 NC_002512.2 + 182953 0.66 0.918636
Target:  5'- ---gUUGCGGugGAugaagUCGAaguGGuAGGCCCc -3'
miRNA:   3'- aagaAGCGCCugCU-----AGCU---CC-UCCGGG- -5'
9153 5' -57.1 NC_002512.2 + 49807 0.66 0.918636
Target:  5'- ---aUCGCGGACGAgaaacugCGgagacAGGGGGUCg -3'
miRNA:   3'- aagaAGCGCCUGCUa------GC-----UCCUCCGGg -5'
9153 5' -57.1 NC_002512.2 + 28896 0.66 0.918636
Target:  5'- cUgUUCGCGGACGAga-AGGuGGaCCUg -3'
miRNA:   3'- aAgAAGCGCCUGCUagcUCCuCC-GGG- -5'
9153 5' -57.1 NC_002512.2 + 99899 0.66 0.918087
Target:  5'- ----gCGCGGcCcGUCGAGGgcgccggGGGCCCg -3'
miRNA:   3'- aagaaGCGCCuGcUAGCUCC-------UCCGGG- -5'
9153 5' -57.1 NC_002512.2 + 208367 0.67 0.91305
Target:  5'- ----gUGCGuuucGACGA-CGAGGuGGCCCg -3'
miRNA:   3'- aagaaGCGC----CUGCUaGCUCCuCCGGG- -5'
9153 5' -57.1 NC_002512.2 + 171735 0.67 0.91305
Target:  5'- ---aUCG-GGACG-UCGAGcucGGGGCCCu -3'
miRNA:   3'- aagaAGCgCCUGCuAGCUC---CUCCGGG- -5'
9153 5' -57.1 NC_002512.2 + 227959 0.67 0.91305
Target:  5'- ----gCGCGGGgGAgccggaGAGGAgGGCCCc -3'
miRNA:   3'- aagaaGCGCCUgCUag----CUCCU-CCGGG- -5'
9153 5' -57.1 NC_002512.2 + 86669 0.67 0.907244
Target:  5'- gUCcgaGCGGACGGcgcgCGAGGGGGacggcaCCa -3'
miRNA:   3'- aAGaagCGCCUGCUa---GCUCCUCCg-----GG- -5'
9153 5' -57.1 NC_002512.2 + 212997 0.67 0.907244
Target:  5'- gUCgcCGCGGcCG-UCGGGcccGGGGCCCu -3'
miRNA:   3'- aAGaaGCGCCuGCuAGCUC---CUCCGGG- -5'
9153 5' -57.1 NC_002512.2 + 151797 0.67 0.907244
Target:  5'- gUC-UCuCGGGCGGUCGGGaGAGagaagcGCCCg -3'
miRNA:   3'- aAGaAGcGCCUGCUAGCUC-CUC------CGGG- -5'
9153 5' -57.1 NC_002512.2 + 225805 0.67 0.907244
Target:  5'- ----cCGCGGGCGGcCG-GGuGGCCUg -3'
miRNA:   3'- aagaaGCGCCUGCUaGCuCCuCCGGG- -5'
9153 5' -57.1 NC_002512.2 + 86643 0.67 0.907244
Target:  5'- -gCggUGUGGugGAUCGcGGuGGCCg -3'
miRNA:   3'- aaGaaGCGCCugCUAGCuCCuCCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.