Results 1 - 20 of 145 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9158 | 3' | -54.6 | NC_002512.2 | + | 53441 | 0.66 | 0.98712 |
Target: 5'- gGAACCCGACa-CCCCGAccGCGg---CGc -3' miRNA: 3'- -CUUGGGCUGcaGGGGCU--UGCaagaGC- -5' |
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9158 | 3' | -54.6 | NC_002512.2 | + | 92558 | 0.66 | 0.98712 |
Target: 5'- uGAGCCCGACcagCgCCGGuagguCGcUCUCGg -3' miRNA: 3'- -CUUGGGCUGca-GgGGCUu----GCaAGAGC- -5' |
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9158 | 3' | -54.6 | NC_002512.2 | + | 207827 | 0.66 | 0.98712 |
Target: 5'- cGACUCGGCGUCuCCCGAucccgGCGcaucCUCu -3' miRNA: 3'- cUUGGGCUGCAG-GGGCU-----UGCaa--GAGc -5' |
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9158 | 3' | -54.6 | NC_002512.2 | + | 135397 | 0.66 | 0.98712 |
Target: 5'- -cGCCCGacgacuGCGUCCCCGGcUGgaUCUCc -3' miRNA: 3'- cuUGGGC------UGCAGGGGCUuGCa-AGAGc -5' |
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9158 | 3' | -54.6 | NC_002512.2 | + | 134169 | 0.66 | 0.98712 |
Target: 5'- cGACCCGGa--CCCUGGcgGCGUUCUuCGg -3' miRNA: 3'- cUUGGGCUgcaGGGGCU--UGCAAGA-GC- -5' |
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9158 | 3' | -54.6 | NC_002512.2 | + | 34460 | 0.66 | 0.986968 |
Target: 5'- cGAcCCCGAaccagucgcugcaCGUCCCCGAgaagACGagCUCc -3' miRNA: 3'- -CUuGGGCU-------------GCAGGGGCU----UGCaaGAGc -5' |
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9158 | 3' | -54.6 | NC_002512.2 | + | 133855 | 0.66 | 0.985544 |
Target: 5'- aGGACaCCGAggaCGUCCUgGGGCGg-CUCGa -3' miRNA: 3'- -CUUG-GGCU---GCAGGGgCUUGCaaGAGC- -5' |
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9158 | 3' | -54.6 | NC_002512.2 | + | 146745 | 0.66 | 0.985544 |
Target: 5'- cGGGCCCGACGaCCUCGAcgACGgggaCGa -3' miRNA: 3'- -CUUGGGCUGCaGGGGCU--UGCaagaGC- -5' |
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9158 | 3' | -54.6 | NC_002512.2 | + | 90457 | 0.66 | 0.985544 |
Target: 5'- cGGCCgGGCcagcugcggGUCCCCGAucaccgggGCGUcCUCGa -3' miRNA: 3'- cUUGGgCUG---------CAGGGGCU--------UGCAaGAGC- -5' |
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9158 | 3' | -54.6 | NC_002512.2 | + | 111336 | 0.66 | 0.985544 |
Target: 5'- --uCCCGACGUCCgacgCGAccGCGUUCg-- -3' miRNA: 3'- cuuGGGCUGCAGGg---GCU--UGCAAGagc -5' |
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9158 | 3' | -54.6 | NC_002512.2 | + | 126077 | 0.66 | 0.985544 |
Target: 5'- --cCCCGACGUCCgggaacUCGGACGUgaUCa -3' miRNA: 3'- cuuGGGCUGCAGG------GGCUUGCAagAGc -5' |
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9158 | 3' | -54.6 | NC_002512.2 | + | 120836 | 0.66 | 0.985378 |
Target: 5'- cGggUCCGGuCGUCCCCcGAGCccccccgGUcCUCGu -3' miRNA: 3'- -CuuGGGCU-GCAGGGG-CUUG-------CAaGAGC- -5' |
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9158 | 3' | -54.6 | NC_002512.2 | + | 204930 | 0.66 | 0.983825 |
Target: 5'- cGggUUCGAC-UCCCUccuGGACGUUcCUCGg -3' miRNA: 3'- -CuuGGGCUGcAGGGG---CUUGCAA-GAGC- -5' |
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9158 | 3' | -54.6 | NC_002512.2 | + | 223783 | 0.66 | 0.983825 |
Target: 5'- gGGACCgGACGUCgCCGGggACGUcggCGg -3' miRNA: 3'- -CUUGGgCUGCAGgGGCU--UGCAagaGC- -5' |
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9158 | 3' | -54.6 | NC_002512.2 | + | 116407 | 0.66 | 0.983825 |
Target: 5'- -cGCCCuGACG-CCCUcGugGUUCUCc -3' miRNA: 3'- cuUGGG-CUGCaGGGGcUugCAAGAGc -5' |
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9158 | 3' | -54.6 | NC_002512.2 | + | 123752 | 0.66 | 0.983825 |
Target: 5'- cGGACCUGGCGgagcUCCUCGGGC--UCUCc -3' miRNA: 3'- -CUUGGGCUGC----AGGGGCUUGcaAGAGc -5' |
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9158 | 3' | -54.6 | NC_002512.2 | + | 119578 | 0.66 | 0.983825 |
Target: 5'- gGAGCCCGGCGggUCCCCucGCGccagcagUgUCGc -3' miRNA: 3'- -CUUGGGCUGC--AGGGGcuUGCa------AgAGC- -5' |
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9158 | 3' | -54.6 | NC_002512.2 | + | 9575 | 0.66 | 0.983645 |
Target: 5'- gGAGCCCGGC--CCCCGGccccccgGCGg-CUCGg -3' miRNA: 3'- -CUUGGGCUGcaGGGGCU-------UGCaaGAGC- -5' |
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9158 | 3' | -54.6 | NC_002512.2 | + | 53402 | 0.66 | 0.983095 |
Target: 5'- gGGACCCcACGUCCCCGucccaaauaUCUCu -3' miRNA: 3'- -CUUGGGcUGCAGGGGCuugca----AGAGc -5' |
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9158 | 3' | -54.6 | NC_002512.2 | + | 72525 | 0.66 | 0.981955 |
Target: 5'- -uGCCCGGCGg-CCCGGAC---CUCGg -3' miRNA: 3'- cuUGGGCUGCagGGGCUUGcaaGAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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