miRNA display CGI


Results 1 - 20 of 145 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9158 3' -54.6 NC_002512.2 + 207827 0.66 0.98712
Target:  5'- cGACUCGGCGUCuCCCGAucccgGCGcaucCUCu -3'
miRNA:   3'- cUUGGGCUGCAG-GGGCU-----UGCaa--GAGc -5'
9158 3' -54.6 NC_002512.2 + 53441 0.66 0.98712
Target:  5'- gGAACCCGACa-CCCCGAccGCGg---CGc -3'
miRNA:   3'- -CUUGGGCUGcaGGGGCU--UGCaagaGC- -5'
9158 3' -54.6 NC_002512.2 + 92558 0.66 0.98712
Target:  5'- uGAGCCCGACcagCgCCGGuagguCGcUCUCGg -3'
miRNA:   3'- -CUUGGGCUGca-GgGGCUu----GCaAGAGC- -5'
9158 3' -54.6 NC_002512.2 + 135397 0.66 0.98712
Target:  5'- -cGCCCGacgacuGCGUCCCCGGcUGgaUCUCc -3'
miRNA:   3'- cuUGGGC------UGCAGGGGCUuGCa-AGAGc -5'
9158 3' -54.6 NC_002512.2 + 134169 0.66 0.98712
Target:  5'- cGACCCGGa--CCCUGGcgGCGUUCUuCGg -3'
miRNA:   3'- cUUGGGCUgcaGGGGCU--UGCAAGA-GC- -5'
9158 3' -54.6 NC_002512.2 + 34460 0.66 0.986968
Target:  5'- cGAcCCCGAaccagucgcugcaCGUCCCCGAgaagACGagCUCc -3'
miRNA:   3'- -CUuGGGCU-------------GCAGGGGCU----UGCaaGAGc -5'
9158 3' -54.6 NC_002512.2 + 90457 0.66 0.985544
Target:  5'- cGGCCgGGCcagcugcggGUCCCCGAucaccgggGCGUcCUCGa -3'
miRNA:   3'- cUUGGgCUG---------CAGGGGCU--------UGCAaGAGC- -5'
9158 3' -54.6 NC_002512.2 + 146745 0.66 0.985544
Target:  5'- cGGGCCCGACGaCCUCGAcgACGgggaCGa -3'
miRNA:   3'- -CUUGGGCUGCaGGGGCU--UGCaagaGC- -5'
9158 3' -54.6 NC_002512.2 + 111336 0.66 0.985544
Target:  5'- --uCCCGACGUCCgacgCGAccGCGUUCg-- -3'
miRNA:   3'- cuuGGGCUGCAGGg---GCU--UGCAAGagc -5'
9158 3' -54.6 NC_002512.2 + 133855 0.66 0.985544
Target:  5'- aGGACaCCGAggaCGUCCUgGGGCGg-CUCGa -3'
miRNA:   3'- -CUUG-GGCU---GCAGGGgCUUGCaaGAGC- -5'
9158 3' -54.6 NC_002512.2 + 126077 0.66 0.985544
Target:  5'- --cCCCGACGUCCgggaacUCGGACGUgaUCa -3'
miRNA:   3'- cuuGGGCUGCAGG------GGCUUGCAagAGc -5'
9158 3' -54.6 NC_002512.2 + 120836 0.66 0.985378
Target:  5'- cGggUCCGGuCGUCCCCcGAGCccccccgGUcCUCGu -3'
miRNA:   3'- -CuuGGGCU-GCAGGGG-CUUG-------CAaGAGC- -5'
9158 3' -54.6 NC_002512.2 + 119578 0.66 0.983825
Target:  5'- gGAGCCCGGCGggUCCCCucGCGccagcagUgUCGc -3'
miRNA:   3'- -CUUGGGCUGC--AGGGGcuUGCa------AgAGC- -5'
9158 3' -54.6 NC_002512.2 + 204930 0.66 0.983825
Target:  5'- cGggUUCGAC-UCCCUccuGGACGUUcCUCGg -3'
miRNA:   3'- -CuuGGGCUGcAGGGG---CUUGCAA-GAGC- -5'
9158 3' -54.6 NC_002512.2 + 223783 0.66 0.983825
Target:  5'- gGGACCgGACGUCgCCGGggACGUcggCGg -3'
miRNA:   3'- -CUUGGgCUGCAGgGGCU--UGCAagaGC- -5'
9158 3' -54.6 NC_002512.2 + 123752 0.66 0.983825
Target:  5'- cGGACCUGGCGgagcUCCUCGGGC--UCUCc -3'
miRNA:   3'- -CUUGGGCUGC----AGGGGCUUGcaAGAGc -5'
9158 3' -54.6 NC_002512.2 + 116407 0.66 0.983825
Target:  5'- -cGCCCuGACG-CCCUcGugGUUCUCc -3'
miRNA:   3'- cuUGGG-CUGCaGGGGcUugCAAGAGc -5'
9158 3' -54.6 NC_002512.2 + 9575 0.66 0.983645
Target:  5'- gGAGCCCGGC--CCCCGGccccccgGCGg-CUCGg -3'
miRNA:   3'- -CUUGGGCUGcaGGGGCU-------UGCaaGAGC- -5'
9158 3' -54.6 NC_002512.2 + 53402 0.66 0.983095
Target:  5'- gGGACCCcACGUCCCCGucccaaauaUCUCu -3'
miRNA:   3'- -CUUGGGcUGCAGGGGCuugca----AGAGc -5'
9158 3' -54.6 NC_002512.2 + 72525 0.66 0.981955
Target:  5'- -uGCCCGGCGg-CCCGGAC---CUCGg -3'
miRNA:   3'- cuUGGGCUGCagGGGCUUGcaaGAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.