Results 21 - 40 of 291 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9164 | 3' | -53.4 | NC_002512.2 | + | 53619 | 0.66 | 0.986966 |
Target: 5'- gACCCGaagcGGAUCGuCGGCGGGGAGaaGCGGc -3' miRNA: 3'- -UGGGUc---UUUGGU-GUCGUCUCUC--UGCC- -5' |
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9164 | 3' | -53.4 | NC_002512.2 | + | 205062 | 0.66 | 0.991029 |
Target: 5'- gGCCCGGAc-CUACuGGCuGGAGAGcgGCGGc -3' miRNA: 3'- -UGGGUCUuuGGUG-UCG-UCUCUC--UGCC- -5' |
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9164 | 3' | -53.4 | NC_002512.2 | + | 153 | 0.66 | 0.989804 |
Target: 5'- --gCGGAGGagGCGGCAG-GAGGCGGc -3' miRNA: 3'- uggGUCUUUggUGUCGUCuCUCUGCC- -5' |
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9164 | 3' | -53.4 | NC_002512.2 | + | 36556 | 0.66 | 0.989804 |
Target: 5'- aGCCCGuu--CCGCuggAGCcGGGAGGCGGc -3' miRNA: 3'- -UGGGUcuuuGGUG---UCGuCUCUCUGCC- -5' |
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9164 | 3' | -53.4 | NC_002512.2 | + | 148420 | 0.66 | 0.991029 |
Target: 5'- uGCCUccugcGGGACCGcCGGgGGAG-GACGGg -3' miRNA: 3'- -UGGGu----CUUUGGU-GUCgUCUCuCUGCC- -5' |
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9164 | 3' | -53.4 | NC_002512.2 | + | 98786 | 0.66 | 0.990309 |
Target: 5'- gGCCCGGcgcACCACgucagguaccccggcGGcCGGAGcGACGGa -3' miRNA: 3'- -UGGGUCuu-UGGUG---------------UC-GUCUCuCUGCC- -5' |
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9164 | 3' | -53.4 | NC_002512.2 | + | 63456 | 0.66 | 0.985337 |
Target: 5'- cCCCGGAGG--ACGGCGGGGaAGAgGGc -3' miRNA: 3'- uGGGUCUUUggUGUCGUCUC-UCUgCC- -5' |
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9164 | 3' | -53.4 | NC_002512.2 | + | 136862 | 0.66 | 0.990185 |
Target: 5'- cGCCUccguguGGAACCACAGCugcccguccgccaccGAGACGGc -3' miRNA: 3'- -UGGGu-----CUUUGGUGUCGucu------------CUCUGCC- -5' |
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9164 | 3' | -53.4 | NC_002512.2 | + | 21797 | 0.66 | 0.989675 |
Target: 5'- -aCCGGGAGCCGaGGCGG-GAagucagcGACGGg -3' miRNA: 3'- ugGGUCUUUGGUgUCGUCuCU-------CUGCC- -5' |
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9164 | 3' | -53.4 | NC_002512.2 | + | 7482 | 0.66 | 0.991485 |
Target: 5'- gGCCCccgccGAAGCCGCGGCgcuccaugaggagccAGAGcccgccggggaAGGCGGc -3' miRNA: 3'- -UGGGu----CUUUGGUGUCG---------------UCUC-----------UCUGCC- -5' |
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9164 | 3' | -53.4 | NC_002512.2 | + | 32927 | 0.66 | 0.990912 |
Target: 5'- uACCUGGAGGCCGucgagcagcaauuCGGCAcaacacgccGGGAGACGu -3' miRNA: 3'- -UGGGUCUUUGGU-------------GUCGU---------CUCUCUGCc -5' |
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9164 | 3' | -53.4 | NC_002512.2 | + | 97190 | 0.66 | 0.989804 |
Target: 5'- cGCCCAcGAcGCCcgucuGCGGCGGcGGGcCGGg -3' miRNA: 3'- -UGGGU-CUuUGG-----UGUCGUCuCUCuGCC- -5' |
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9164 | 3' | -53.4 | NC_002512.2 | + | 204817 | 0.66 | 0.991029 |
Target: 5'- uCCCGGggG-CGCGGCGGcuccguccgggaGGAcGACGGc -3' miRNA: 3'- uGGGUCuuUgGUGUCGUC------------UCU-CUGCC- -5' |
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9164 | 3' | -53.4 | NC_002512.2 | + | 78101 | 0.66 | 0.991029 |
Target: 5'- cGCCCgAGAGACCAaaacccuccCGGGGAGAUGu -3' miRNA: 3'- -UGGG-UCUUUGGUguc------GUCUCUCUGCc -5' |
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9164 | 3' | -53.4 | NC_002512.2 | + | 74865 | 0.66 | 0.989804 |
Target: 5'- cGCUCcGGAACCGCAcCcGGGAcGACGGg -3' miRNA: 3'- -UGGGuCUUUGGUGUcGuCUCU-CUGCC- -5' |
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9164 | 3' | -53.4 | NC_002512.2 | + | 212881 | 0.66 | 0.991029 |
Target: 5'- cUCCGGAGACgGCGGCcauGGAccGAGuCGGc -3' miRNA: 3'- uGGGUCUUUGgUGUCG---UCU--CUCuGCC- -5' |
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9164 | 3' | -53.4 | NC_002512.2 | + | 220202 | 0.66 | 0.991029 |
Target: 5'- cCCCGccGggGCCcgACGGCGGcccgGGGGACGa -3' miRNA: 3'- uGGGU--CuuUGG--UGUCGUC----UCUCUGCc -5' |
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9164 | 3' | -53.4 | NC_002512.2 | + | 157362 | 0.66 | 0.989804 |
Target: 5'- cGCCgAGGuccgGGCCGCcgGGCAGGGAccgGACGa -3' miRNA: 3'- -UGGgUCU----UUGGUG--UCGUCUCU---CUGCc -5' |
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9164 | 3' | -53.4 | NC_002512.2 | + | 75537 | 0.66 | 0.991029 |
Target: 5'- cACCCucGAcGCCGUGGCGGAG-GACGa -3' miRNA: 3'- -UGGGu-CUuUGGUGUCGUCUCuCUGCc -5' |
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9164 | 3' | -53.4 | NC_002512.2 | + | 35943 | 0.66 | 0.989804 |
Target: 5'- cGCgCCAGAcgacguuccccGGCCGuCAGCGGAGuccgGGACGc -3' miRNA: 3'- -UG-GGUCU-----------UUGGU-GUCGUCUC----UCUGCc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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