miRNA display CGI


Results 1 - 20 of 291 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9164 3' -53.4 NC_002512.2 + 35905 0.66 0.988453
Target:  5'- uACCUGGAGAgCGCGGUcaGGAGccgccGGCGGc -3'
miRNA:   3'- -UGGGUCUUUgGUGUCG--UCUCu----CUGCC- -5'
9164 3' -53.4 NC_002512.2 + 111281 0.66 0.986966
Target:  5'- cUCCAuGucGGCCGCcGCGGGGAGAgGGc -3'
miRNA:   3'- uGGGU-Cu-UUGGUGuCGUCUCUCUgCC- -5'
9164 3' -53.4 NC_002512.2 + 160502 0.66 0.985337
Target:  5'- aACCCGuuAACCAcCAGUGGAacgaAGGCGGa -3'
miRNA:   3'- -UGGGUcuUUGGU-GUCGUCUc---UCUGCC- -5'
9164 3' -53.4 NC_002512.2 + 37155 0.66 0.986332
Target:  5'- -gCCAGGacgacgaaggccacGACgGCGGCGGAGAaguagaaGACGGc -3'
miRNA:   3'- ugGGUCU--------------UUGgUGUCGUCUCU-------CUGCC- -5'
9164 3' -53.4 NC_002512.2 + 21797 0.66 0.989675
Target:  5'- -aCCGGGAGCCGaGGCGG-GAagucagcGACGGg -3'
miRNA:   3'- ugGGUCUUUGGUgUCGUCuCU-------CUGCC- -5'
9164 3' -53.4 NC_002512.2 + 63456 0.66 0.985337
Target:  5'- cCCCGGAGG--ACGGCGGGGaAGAgGGc -3'
miRNA:   3'- uGGGUCUUUggUGUCGUCUC-UCUgCC- -5'
9164 3' -53.4 NC_002512.2 + 123991 0.66 0.988453
Target:  5'- gACgaCGGcGAGCCcacCGGguGGGAGACGGa -3'
miRNA:   3'- -UGg-GUC-UUUGGu--GUCguCUCUCUGCC- -5'
9164 3' -53.4 NC_002512.2 + 17880 0.66 0.986966
Target:  5'- gGCCCGGGggacgugauaGGCgGCGGCGGccccgaGGAcGACGGc -3'
miRNA:   3'- -UGGGUCU----------UUGgUGUCGUC------UCU-CUGCC- -5'
9164 3' -53.4 NC_002512.2 + 83452 0.66 0.988311
Target:  5'- cGCCCGGAcgaagucgugcggGGCggcgCGCAGCuucGGGGGGACGa -3'
miRNA:   3'- -UGGGUCU-------------UUG----GUGUCG---UCUCUCUGCc -5'
9164 3' -53.4 NC_002512.2 + 11058 0.66 0.986966
Target:  5'- uCgCAGAGcaggGCCGCGGaGGGcGAGACGGa -3'
miRNA:   3'- uGgGUCUU----UGGUGUCgUCU-CUCUGCC- -5'
9164 3' -53.4 NC_002512.2 + 21468 0.66 0.989675
Target:  5'- gGCgCCGGGAGCgGCGcccGUAGAGcauccgcAGGCGGg -3'
miRNA:   3'- -UG-GGUCUUUGgUGU---CGUCUC-------UCUGCC- -5'
9164 3' -53.4 NC_002512.2 + 223077 0.66 0.986966
Target:  5'- cGCUCGGAGAagGCGGUuGAccGAGACGGc -3'
miRNA:   3'- -UGGGUCUUUggUGUCGuCU--CUCUGCC- -5'
9164 3' -53.4 NC_002512.2 + 153 0.66 0.989804
Target:  5'- --gCGGAGGagGCGGCAG-GAGGCGGc -3'
miRNA:   3'- uggGUCUUUggUGUCGUCuCUCUGCC- -5'
9164 3' -53.4 NC_002512.2 + 9439 0.66 0.986966
Target:  5'- uGCCCGuGGAGCC-CAcGUAGAGcuccGGCGGc -3'
miRNA:   3'- -UGGGU-CUUUGGuGU-CGUCUCu---CUGCC- -5'
9164 3' -53.4 NC_002512.2 + 34912 0.66 0.985337
Target:  5'- cGCCgAGAggaggacgaGACgACGGCGGGGucgcggcGACGGg -3'
miRNA:   3'- -UGGgUCU---------UUGgUGUCGUCUCu------CUGCC- -5'
9164 3' -53.4 NC_002512.2 + 84462 0.66 0.986966
Target:  5'- gUCCAGc-ACCGCGGCGGAcGAGcCGa -3'
miRNA:   3'- uGGGUCuuUGGUGUCGUCU-CUCuGCc -5'
9164 3' -53.4 NC_002512.2 + 35943 0.66 0.989804
Target:  5'- cGCgCCAGAcgacguuccccGGCCGuCAGCGGAGuccgGGACGc -3'
miRNA:   3'- -UG-GGUCU-----------UUGGU-GUCGUCUC----UCUGCc -5'
9164 3' -53.4 NC_002512.2 + 53619 0.66 0.986966
Target:  5'- gACCCGaagcGGAUCGuCGGCGGGGAGaaGCGGc -3'
miRNA:   3'- -UGGGUc---UUUGGU-GUCGUCUCUC--UGCC- -5'
9164 3' -53.4 NC_002512.2 + 131806 0.66 0.989804
Target:  5'- gACCCc-GAACgCGCAGaagaAGAGAGuGCGGa -3'
miRNA:   3'- -UGGGucUUUG-GUGUCg---UCUCUC-UGCC- -5'
9164 3' -53.4 NC_002512.2 + 128577 0.66 0.988453
Target:  5'- cUCCGGggGCCGacccuGC-GAGAGGcCGGg -3'
miRNA:   3'- uGGGUCuuUGGUgu---CGuCUCUCU-GCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.