miRNA display CGI


Results 1 - 20 of 291 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9164 3' -53.4 NC_002512.2 + 79714 0.71 0.87241
Target:  5'- cCCCAG--GCC-CGGCAGGGAgagcgagGACGGg -3'
miRNA:   3'- uGGGUCuuUGGuGUCGUCUCU-------CUGCC- -5'
9164 3' -53.4 NC_002512.2 + 226906 0.74 0.763947
Target:  5'- cACCUcggAGAGACgACGGCGaAGGGGCGGa -3'
miRNA:   3'- -UGGG---UCUUUGgUGUCGUcUCUCUGCC- -5'
9164 3' -53.4 NC_002512.2 + 165123 0.73 0.773266
Target:  5'- uCCCAGGAGCCACccgcuuugaugAGCAuAGGGACGu -3'
miRNA:   3'- uGGGUCUUUGGUG-----------UCGUcUCUCUGCc -5'
9164 3' -53.4 NC_002512.2 + 47808 0.73 0.773266
Target:  5'- cGCCCAGAccccggAGCCGCGGCuGAG-GuCGGc -3'
miRNA:   3'- -UGGGUCU------UUGGUGUCGuCUCuCuGCC- -5'
9164 3' -53.4 NC_002512.2 + 56257 0.73 0.81784
Target:  5'- gACCCGGGGuucGCCGCcGCGGcGGAGGCGc -3'
miRNA:   3'- -UGGGUCUU---UGGUGuCGUC-UCUCUGCc -5'
9164 3' -53.4 NC_002512.2 + 132829 0.72 0.833752
Target:  5'- cACCCAGcacaccagguaguAGACCACGauGCAGAaGaAGACGGa -3'
miRNA:   3'- -UGGGUC-------------UUUGGUGU--CGUCU-C-UCUGCC- -5'
9164 3' -53.4 NC_002512.2 + 9381 0.72 0.857538
Target:  5'- uCCCGGGcgacgcaGGCCACGGCcucgcugcgGGuGAGGCGGa -3'
miRNA:   3'- uGGGUCU-------UUGGUGUCG---------UCuCUCUGCC- -5'
9164 3' -53.4 NC_002512.2 + 41213 0.72 0.858301
Target:  5'- uCCCcGAGACCGCcGCGGucGGAcGACGGg -3'
miRNA:   3'- uGGGuCUUUGGUGuCGUC--UCU-CUGCC- -5'
9164 3' -53.4 NC_002512.2 + 52780 0.71 0.87241
Target:  5'- cACCCGGAccuCCuggucgcggagacGCAGCGGGGGcuGACGGa -3'
miRNA:   3'- -UGGGUCUuu-GG-------------UGUCGUCUCU--CUGCC- -5'
9164 3' -53.4 NC_002512.2 + 28072 0.74 0.763947
Target:  5'- cCCCGGG---CGCGGCGGAGAcGGCGGa -3'
miRNA:   3'- uGGGUCUuugGUGUCGUCUCU-CUGCC- -5'
9164 3' -53.4 NC_002512.2 + 21221 0.74 0.744974
Target:  5'- cCCCGGGAcGCCGCccggGGCGGAGAcgggGGCGGa -3'
miRNA:   3'- uGGGUCUU-UGGUG----UCGUCUCU----CUGCC- -5'
9164 3' -53.4 NC_002512.2 + 115870 0.74 0.735338
Target:  5'- cGCCCGGu-GCCGCuGCGGGGccGACGGc -3'
miRNA:   3'- -UGGGUCuuUGGUGuCGUCUCu-CUGCC- -5'
9164 3' -53.4 NC_002512.2 + 74923 0.81 0.397935
Target:  5'- gGCCCGGAggcggaucgcgGACCGCGGgAGAGcGACGGg -3'
miRNA:   3'- -UGGGUCU-----------UUGGUGUCgUCUCuCUGCC- -5'
9164 3' -53.4 NC_002512.2 + 5315 0.79 0.459453
Target:  5'- aACCCGGGuAGCCGCGGUGGGGAucGAUGGg -3'
miRNA:   3'- -UGGGUCU-UUGGUGUCGUCUCU--CUGCC- -5'
9164 3' -53.4 NC_002512.2 + 37289 0.78 0.53544
Target:  5'- cGCCgCGGcgcGCCGCAGCAGcGGGACGGu -3'
miRNA:   3'- -UGG-GUCuu-UGGUGUCGUCuCUCUGCC- -5'
9164 3' -53.4 NC_002512.2 + 27610 0.76 0.645726
Target:  5'- cCCCGGuc-CCACAGCgcGGAGAGACGc -3'
miRNA:   3'- uGGGUCuuuGGUGUCG--UCUCUCUGCc -5'
9164 3' -53.4 NC_002512.2 + 44482 0.76 0.645726
Target:  5'- cGCCCcGggGCCG-GGCGGAGaAGACGGc -3'
miRNA:   3'- -UGGGuCuuUGGUgUCGUCUC-UCUGCC- -5'
9164 3' -53.4 NC_002512.2 + 70687 0.76 0.665927
Target:  5'- uCCCGGGGACCgGCcgGGCGG-GGGACGGg -3'
miRNA:   3'- uGGGUCUUUGG-UG--UCGUCuCUCUGCC- -5'
9164 3' -53.4 NC_002512.2 + 131932 0.75 0.70594
Target:  5'- -aCCGGAGACC--GGCGGAGAGACa- -3'
miRNA:   3'- ugGGUCUUUGGugUCGUCUCUCUGcc -5'
9164 3' -53.4 NC_002512.2 + 120775 0.74 0.735338
Target:  5'- gACUCGGcgGCCGuCGGCGGGGGcGGCGGg -3'
miRNA:   3'- -UGGGUCuuUGGU-GUCGUCUCU-CUGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.