miRNA display CGI


Results 1 - 20 of 291 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9164 3' -53.4 NC_002512.2 + 59433 1.1 0.00691
Target:  5'- aACCCAGAAACCACAGCAGAGAGACGGu -3'
miRNA:   3'- -UGGGUCUUUGGUGUCGUCUCUCUGCC- -5'
9164 3' -53.4 NC_002512.2 + 97361 0.85 0.253104
Target:  5'- cGCCCgcggagcGGGGACCGCGGCGGccGGAGACGGg -3'
miRNA:   3'- -UGGG-------UCUUUGGUGUCGUC--UCUCUGCC- -5'
9164 3' -53.4 NC_002512.2 + 74923 0.81 0.397935
Target:  5'- gGCCCGGAggcggaucgcgGACCGCGGgAGAGcGACGGg -3'
miRNA:   3'- -UGGGUCU-----------UUGGUGUCgUCUCuCUGCC- -5'
9164 3' -53.4 NC_002512.2 + 5315 0.79 0.459453
Target:  5'- aACCCGGGuAGCCGCGGUGGGGAucGAUGGg -3'
miRNA:   3'- -UGGGUCU-UUGGUGUCGUCUCU--CUGCC- -5'
9164 3' -53.4 NC_002512.2 + 146884 0.79 0.459453
Target:  5'- cGCCCGGAGGCCcaggcGCAGCuG-GAGGCGGc -3'
miRNA:   3'- -UGGGUCUUUGG-----UGUCGuCuCUCUGCC- -5'
9164 3' -53.4 NC_002512.2 + 150212 0.79 0.487326
Target:  5'- aACCCGGAGGCCGC--CGGGGAGGCGa -3'
miRNA:   3'- -UGGGUCUUUGGUGucGUCUCUCUGCc -5'
9164 3' -53.4 NC_002512.2 + 37289 0.78 0.53544
Target:  5'- cGCCgCGGcgcGCCGCAGCAGcGGGACGGu -3'
miRNA:   3'- -UGG-GUCuu-UGGUGUCGUCuCUCUGCC- -5'
9164 3' -53.4 NC_002512.2 + 128142 0.77 0.575088
Target:  5'- cGCCCGGGccACCACcucGCgAGGGAGACGGa -3'
miRNA:   3'- -UGGGUCUu-UGGUGu--CG-UCUCUCUGCC- -5'
9164 3' -53.4 NC_002512.2 + 227233 0.76 0.615365
Target:  5'- -aCCGGGAGgCGCGGCGGAcGGGCGGg -3'
miRNA:   3'- ugGGUCUUUgGUGUCGUCUcUCUGCC- -5'
9164 3' -53.4 NC_002512.2 + 44482 0.76 0.645726
Target:  5'- cGCCCcGggGCCG-GGCGGAGaAGACGGc -3'
miRNA:   3'- -UGGGuCuuUGGUgUCGUCUC-UCUGCC- -5'
9164 3' -53.4 NC_002512.2 + 27610 0.76 0.645726
Target:  5'- cCCCGGuc-CCACAGCgcGGAGAGACGc -3'
miRNA:   3'- uGGGUCuuuGGUGUCG--UCUCUCUGCc -5'
9164 3' -53.4 NC_002512.2 + 70687 0.76 0.665927
Target:  5'- uCCCGGGGACCgGCcgGGCGG-GGGACGGg -3'
miRNA:   3'- uGGGUCUUUGG-UG--UCGUCuCUCUGCC- -5'
9164 3' -53.4 NC_002512.2 + 105646 0.75 0.696007
Target:  5'- gACCCGGccgagguagggcGAGCCGCAGCAGAcGGcGCGGu -3'
miRNA:   3'- -UGGGUC------------UUUGGUGUCGUCUcUC-UGCC- -5'
9164 3' -53.4 NC_002512.2 + 131932 0.75 0.70594
Target:  5'- -aCCGGAGACC--GGCGGAGAGACa- -3'
miRNA:   3'- ugGGUCUUUGGugUCGUCUCUCUGcc -5'
9164 3' -53.4 NC_002512.2 + 223504 0.75 0.715812
Target:  5'- uGCCCGucgcGAcGACCACGGCGGAGA-ACGGc -3'
miRNA:   3'- -UGGGU----CU-UUGGUGUCGUCUCUcUGCC- -5'
9164 3' -53.4 NC_002512.2 + 113245 0.75 0.715812
Target:  5'- gGCagCAGGAGCCucgGCAGCgAGGGGGGCGGc -3'
miRNA:   3'- -UGg-GUCUUUGG---UGUCG-UCUCUCUGCC- -5'
9164 3' -53.4 NC_002512.2 + 115870 0.74 0.735338
Target:  5'- cGCCCGGu-GCCGCuGCGGGGccGACGGc -3'
miRNA:   3'- -UGGGUCuuUGGUGuCGUCUCu-CUGCC- -5'
9164 3' -53.4 NC_002512.2 + 120775 0.74 0.735338
Target:  5'- gACUCGGcgGCCGuCGGCGGGGGcGGCGGg -3'
miRNA:   3'- -UGGGUCuuUGGU-GUCGUCUCU-CUGCC- -5'
9164 3' -53.4 NC_002512.2 + 130578 0.74 0.735338
Target:  5'- gACCgugaaGGAGGCCGCGGCcucGGAGGCGGa -3'
miRNA:   3'- -UGGg----UCUUUGGUGUCGuc-UCUCUGCC- -5'
9164 3' -53.4 NC_002512.2 + 158978 0.74 0.744974
Target:  5'- gUUCGGcgGCCACGGCGGggcGGAGGCGGc -3'
miRNA:   3'- uGGGUCuuUGGUGUCGUC---UCUCUGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.