miRNA display CGI


Results 1 - 20 of 291 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9164 3' -53.4 NC_002512.2 + 139 0.69 0.938852
Target:  5'- cGCCgGGGAGCCG-GGCGGGGcgccGGCGGa -3'
miRNA:   3'- -UGGgUCUUUGGUgUCGUCUCu---CUGCC- -5'
9164 3' -53.4 NC_002512.2 + 153 0.66 0.989804
Target:  5'- --gCGGAGGagGCGGCAG-GAGGCGGc -3'
miRNA:   3'- uggGUCUUUggUGUCGUCuCUCUGCC- -5'
9164 3' -53.4 NC_002512.2 + 203 0.7 0.931031
Target:  5'- gGCCCGGGcggagagggagcgggGACCGaagGGCAGGcGGGCGGg -3'
miRNA:   3'- -UGGGUCU---------------UUGGUg--UCGUCUcUCUGCC- -5'
9164 3' -53.4 NC_002512.2 + 2026 0.71 0.880234
Target:  5'- gGCaCCAGGAggaGCgACAGCAGGGuGAuCGGc -3'
miRNA:   3'- -UG-GGUCUU---UGgUGUCGUCUCuCU-GCC- -5'
9164 3' -53.4 NC_002512.2 + 2285 0.67 0.979511
Target:  5'- cGCCCuccGGCCGCuGCGG-GuGGCGGg -3'
miRNA:   3'- -UGGGucuUUGGUGuCGUCuCuCUGCC- -5'
9164 3' -53.4 NC_002512.2 + 3784 0.69 0.943439
Target:  5'- gACCCGGAgucgGACCGgAGCAgucccGAGAgcgagccgucGACGGa -3'
miRNA:   3'- -UGGGUCU----UUGGUgUCGU-----CUCU----------CUGCC- -5'
9164 3' -53.4 NC_002512.2 + 4383 0.68 0.962637
Target:  5'- aGCCCGGGAcccCCGCGGCGGccccguagaucgcGGucGACGGc -3'
miRNA:   3'- -UGGGUCUUu--GGUGUCGUC-------------UCu-CUGCC- -5'
9164 3' -53.4 NC_002512.2 + 4729 0.67 0.980374
Target:  5'- uCCCGGcu-CCgggcaugcgucgucgACGGCGGaAGAGGCGGa -3'
miRNA:   3'- uGGGUCuuuGG---------------UGUCGUC-UCUCUGCC- -5'
9164 3' -53.4 NC_002512.2 + 4967 0.68 0.955826
Target:  5'- gACCCGGuccCCGCGaCGGAgguGAGACGGc -3'
miRNA:   3'- -UGGGUCuuuGGUGUcGUCU---CUCUGCC- -5'
9164 3' -53.4 NC_002512.2 + 5315 0.79 0.459453
Target:  5'- aACCCGGGuAGCCGCGGUGGGGAucGAUGGg -3'
miRNA:   3'- -UGGGUCU-UUGGUGUCGUCUCU--CUGCC- -5'
9164 3' -53.4 NC_002512.2 + 6329 0.67 0.97723
Target:  5'- cGCCCgcggGGGGACCGgGcGCGGGGccGGCGGg -3'
miRNA:   3'- -UGGG----UCUUUGGUgU-CGUCUCu-CUGCC- -5'
9164 3' -53.4 NC_002512.2 + 6384 0.69 0.934034
Target:  5'- cGCCguGGucgucGCgACgGGCAGGGAGGCGGc -3'
miRNA:   3'- -UGGguCUu----UGgUG-UCGUCUCUCUGCC- -5'
9164 3' -53.4 NC_002512.2 + 6816 0.68 0.959508
Target:  5'- gACCCGGGucucGGCCACGGUGGcgaccAGGGGCa- -3'
miRNA:   3'- -UGGGUCU----UUGGUGUCGUC-----UCUCUGcc -5'
9164 3' -53.4 NC_002512.2 + 7238 0.7 0.928982
Target:  5'- gGCCCGGccGGCCgucGCGGCGGAGcGGCGu -3'
miRNA:   3'- -UGGGUCu-UUGG---UGUCGUCUCuCUGCc -5'
9164 3' -53.4 NC_002512.2 + 7482 0.66 0.991485
Target:  5'- gGCCCccgccGAAGCCGCGGCgcuccaugaggagccAGAGcccgccggggaAGGCGGc -3'
miRNA:   3'- -UGGGu----CUUUGGUGUCG---------------UCUC-----------UCUGCC- -5'
9164 3' -53.4 NC_002512.2 + 8334 0.68 0.962974
Target:  5'- -gCCGGAGACCGCggguccggcguAGCGGu-AGGCGGg -3'
miRNA:   3'- ugGGUCUUUGGUG-----------UCGUCucUCUGCC- -5'
9164 3' -53.4 NC_002512.2 + 9381 0.72 0.857538
Target:  5'- uCCCGGGcgacgcaGGCCACGGCcucgcugcgGGuGAGGCGGa -3'
miRNA:   3'- uGGGUCU-------UUGGUGUCG---------UCuCUCUGCC- -5'
9164 3' -53.4 NC_002512.2 + 9439 0.66 0.986966
Target:  5'- uGCCCGuGGAGCC-CAcGUAGAGcuccGGCGGc -3'
miRNA:   3'- -UGGGU-CUUUGGuGU-CGUCUCu---CUGCC- -5'
9164 3' -53.4 NC_002512.2 + 10280 0.7 0.912424
Target:  5'- uGCCCgAGAAGCCG-GGCAGcGAGuCGGc -3'
miRNA:   3'- -UGGG-UCUUUGGUgUCGUCuCUCuGCC- -5'
9164 3' -53.4 NC_002512.2 + 10870 0.68 0.969273
Target:  5'- -aCCAGcAcgUCGCAGCAGcagugcuggaGGAGGCGGu -3'
miRNA:   3'- ugGGUC-UuuGGUGUCGUC----------UCUCUGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.