miRNA display CGI


Results 21 - 40 of 291 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9164 3' -53.4 NC_002512.2 + 11058 0.66 0.986966
Target:  5'- uCgCAGAGcaggGCCGCGGaGGGcGAGACGGa -3'
miRNA:   3'- uGgGUCUU----UGGUGUCgUCU-CUCUGCC- -5'
9164 3' -53.4 NC_002512.2 + 11668 0.67 0.972118
Target:  5'- cGCCgCGGcccGCCGCGGCcc-GAGGCGGg -3'
miRNA:   3'- -UGG-GUCuu-UGGUGUCGucuCUCUGCC- -5'
9164 3' -53.4 NC_002512.2 + 13479 0.68 0.962974
Target:  5'- cCCCGGAccuGCUGCGGCcgaacaacacGGAGAcGGCGGc -3'
miRNA:   3'- uGGGUCUu--UGGUGUCG----------UCUCU-CUGCC- -5'
9164 3' -53.4 NC_002512.2 + 13677 0.7 0.918177
Target:  5'- uCCCGGAcgaggcgacGGCCGCGGCGGuGAucACGGg -3'
miRNA:   3'- uGGGUCU---------UUGGUGUCGUCuCUc-UGCC- -5'
9164 3' -53.4 NC_002512.2 + 15191 0.7 0.928982
Target:  5'- aGCCUGGGGAaaAUAGgGGAGAGAgCGGg -3'
miRNA:   3'- -UGGGUCUUUggUGUCgUCUCUCU-GCC- -5'
9164 3' -53.4 NC_002512.2 + 17880 0.66 0.986966
Target:  5'- gGCCCGGGggacgugauaGGCgGCGGCGGccccgaGGAcGACGGc -3'
miRNA:   3'- -UGGGUCU----------UUGgUGUCGUC------UCU-CUGCC- -5'
9164 3' -53.4 NC_002512.2 + 21221 0.74 0.744974
Target:  5'- cCCCGGGAcGCCGCccggGGCGGAGAcgggGGCGGa -3'
miRNA:   3'- uGGGUCUU-UGGUG----UCGUCUCU----CUGCC- -5'
9164 3' -53.4 NC_002512.2 + 21468 0.66 0.989675
Target:  5'- gGCgCCGGGAGCgGCGcccGUAGAGcauccgcAGGCGGg -3'
miRNA:   3'- -UG-GGUCUUUGgUGU---CGUCUC-------UCUGCC- -5'
9164 3' -53.4 NC_002512.2 + 21797 0.66 0.989675
Target:  5'- -aCCGGGAGCCGaGGCGG-GAagucagcGACGGg -3'
miRNA:   3'- ugGGUCUUUGGUgUCGUCuCU-------CUGCC- -5'
9164 3' -53.4 NC_002512.2 + 22228 0.68 0.969273
Target:  5'- aGCCCGGGAcgccACCACGGCcGccGGaACGGa -3'
miRNA:   3'- -UGGGUCUU----UGGUGUCGuCucUC-UGCC- -5'
9164 3' -53.4 NC_002512.2 + 22283 0.67 0.97723
Target:  5'- cGCCgCAGcAGCCGCcgccgucgcaGGcCAGGGAGAgGGg -3'
miRNA:   3'- -UGG-GUCuUUGGUG----------UC-GUCUCUCUgCC- -5'
9164 3' -53.4 NC_002512.2 + 22588 0.68 0.955446
Target:  5'- gGCUCGGAGGCCACGGUgcuggacacguccGGGGAGuGCa- -3'
miRNA:   3'- -UGGGUCUUUGGUGUCG-------------UCUCUC-UGcc -5'
9164 3' -53.4 NC_002512.2 + 27504 0.67 0.972118
Target:  5'- -gCCAGAaaaaGACCGCA-CAGcgucGGAGGCGGc -3'
miRNA:   3'- ugGGUCU----UUGGUGUcGUC----UCUCUGCC- -5'
9164 3' -53.4 NC_002512.2 + 27610 0.76 0.645726
Target:  5'- cCCCGGuc-CCACAGCgcGGAGAGACGc -3'
miRNA:   3'- uGGGUCuuuGGUGUCG--UCUCUCUGCc -5'
9164 3' -53.4 NC_002512.2 + 27987 0.67 0.979511
Target:  5'- -gCgAGAuuCCGgcGCGGGGAGACGGa -3'
miRNA:   3'- ugGgUCUuuGGUguCGUCUCUCUGCC- -5'
9164 3' -53.4 NC_002512.2 + 28072 0.74 0.763947
Target:  5'- cCCCGGG---CGCGGCGGAGAcGGCGGa -3'
miRNA:   3'- uGGGUCUuugGUGUCGUCUCU-CUGCC- -5'
9164 3' -53.4 NC_002512.2 + 32841 0.67 0.981617
Target:  5'- uGCCCAG--GCUGCAGgAG-GuGACGGu -3'
miRNA:   3'- -UGGGUCuuUGGUGUCgUCuCuCUGCC- -5'
9164 3' -53.4 NC_002512.2 + 32927 0.66 0.990912
Target:  5'- uACCUGGAGGCCGucgagcagcaauuCGGCAcaacacgccGGGAGACGu -3'
miRNA:   3'- -UGGGUCUUUGGU-------------GUCGU---------CUCUCUGCc -5'
9164 3' -53.4 NC_002512.2 + 33005 0.71 0.893785
Target:  5'- cGCCgucgauGAGcauCCGCGGCAGAGcGACGGg -3'
miRNA:   3'- -UGGgu----CUUu--GGUGUCGUCUCuCUGCC- -5'
9164 3' -53.4 NC_002512.2 + 33249 0.69 0.947794
Target:  5'- cCCCAGAcacacggcgucGGCCACccgGGCGaaccGGGAGAUGGu -3'
miRNA:   3'- uGGGUCU-----------UUGGUG---UCGU----CUCUCUGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.