miRNA display CGI


Results 21 - 40 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9164 5' -63.5 NC_002512.2 + 98567 0.71 0.355303
Target:  5'- gAUCCGgcGGGCgCCUCgGgCGGCGGGUCg- -3'
miRNA:   3'- -UAGGC--UCCG-GGAG-CgGUCGCCCAGag -5'
9164 5' -63.5 NC_002512.2 + 99212 0.68 0.559724
Target:  5'- cUCCGcGGCCgC-CGCCGuGUGGGUCg- -3'
miRNA:   3'- uAGGCuCCGG-GaGCGGU-CGCCCAGag -5'
9164 5' -63.5 NC_002512.2 + 100430 0.66 0.655104
Target:  5'- cGUCCGAGGgCCUCGCa----GGUCUUc -3'
miRNA:   3'- -UAGGCUCCgGGAGCGgucgcCCAGAG- -5'
9164 5' -63.5 NC_002512.2 + 101197 0.68 0.550336
Target:  5'- uGUCCGAgacgccGGCgUUCGCCA--GGGUCUCc -3'
miRNA:   3'- -UAGGCU------CCGgGAGCGGUcgCCCAGAG- -5'
9164 5' -63.5 NC_002512.2 + 101690 0.67 0.607214
Target:  5'- cGUCCccGGUCC-CGCCGGCGGcccgCUCg -3'
miRNA:   3'- -UAGGcuCCGGGaGCGGUCGCCca--GAG- -5'
9164 5' -63.5 NC_002512.2 + 101761 0.66 0.626365
Target:  5'- -cCCGGGcGCUC-CGUCGGCGGGaaccCUCg -3'
miRNA:   3'- uaGGCUC-CGGGaGCGGUCGCCCa---GAG- -5'
9164 5' -63.5 NC_002512.2 + 101849 0.67 0.578625
Target:  5'- -gUCGGGGCCgUgcagcucuucgaCGCCggGGCGGGUCUg -3'
miRNA:   3'- uaGGCUCCGGgA------------GCGG--UCGCCCAGAg -5'
9164 5' -63.5 NC_002512.2 + 101964 0.72 0.340773
Target:  5'- -cCCGcGGGCCC--GCCGGCGGG-CUCg -3'
miRNA:   3'- uaGGC-UCCGGGagCGGUCGCCCaGAG- -5'
9164 5' -63.5 NC_002512.2 + 102367 0.66 0.63595
Target:  5'- cGUCCgGAGGUCCUggaGCCGGacgaGGGgaugCUCc -3'
miRNA:   3'- -UAGG-CUCCGGGAg--CGGUCg---CCCa---GAG- -5'
9164 5' -63.5 NC_002512.2 + 104792 0.68 0.540998
Target:  5'- --gCGGGGUCCgCGCgCGGCGGGUUg- -3'
miRNA:   3'- uagGCUCCGGGaGCG-GUCGCCCAGag -5'
9164 5' -63.5 NC_002512.2 + 105033 0.76 0.190753
Target:  5'- cGUCCG-GGUCCUCGUC-GCGGGcCUCg -3'
miRNA:   3'- -UAGGCuCCGGGAGCGGuCGCCCaGAG- -5'
9164 5' -63.5 NC_002512.2 + 105899 0.69 0.451241
Target:  5'- gGUCCGuguGGCUCUCcggcguCCGGUGGGUcCUCg -3'
miRNA:   3'- -UAGGCu--CCGGGAGc-----GGUCGCCCA-GAG- -5'
9164 5' -63.5 NC_002512.2 + 108433 0.67 0.607214
Target:  5'- -cCCGGGGCCggggGCCGGgGGGUCc- -3'
miRNA:   3'- uaGGCUCCGGgag-CGGUCgCCCAGag -5'
9164 5' -63.5 NC_002512.2 + 108946 0.68 0.540998
Target:  5'- -aCCGccGCCCUUGCCcGuCGGGUCg- -3'
miRNA:   3'- uaGGCucCGGGAGCGGuC-GCCCAGag -5'
9164 5' -63.5 NC_002512.2 + 115858 0.66 0.63595
Target:  5'- -cUCGAGGCgUUCGCCgaGGCGGGcC-Cg -3'
miRNA:   3'- uaGGCUCCGgGAGCGG--UCGCCCaGaG- -5'
9164 5' -63.5 NC_002512.2 + 117124 0.67 0.569155
Target:  5'- --aCGGGGCCC-CGUCGGCGGcGUUcgagUCg -3'
miRNA:   3'- uagGCUCCGGGaGCGGUCGCC-CAG----AG- -5'
9164 5' -63.5 NC_002512.2 + 122798 0.69 0.486245
Target:  5'- -gCCG-GGCCCUgG-CGGCGGGUCc- -3'
miRNA:   3'- uaGGCuCCGGGAgCgGUCGCCCAGag -5'
9164 5' -63.5 NC_002512.2 + 123215 0.67 0.607215
Target:  5'- -cCCGAGGaCgUCGCCGcccaguGCGGG-CUCg -3'
miRNA:   3'- uaGGCUCCgGgAGCGGU------CGCCCaGAG- -5'
9164 5' -63.5 NC_002512.2 + 123294 0.69 0.486245
Target:  5'- -gCCGGcuGGCCCgguUCGCCaagaAGCGGGUgUCc -3'
miRNA:   3'- uaGGCU--CCGGG---AGCGG----UCGCCCAgAG- -5'
9164 5' -63.5 NC_002512.2 + 123364 0.67 0.56821
Target:  5'- gGUCCGGGGCCgcgagaUCGUCAacccgcGCGGGgaguucuUCUCg -3'
miRNA:   3'- -UAGGCUCCGGg-----AGCGGU------CGCCC-------AGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.