miRNA display CGI


Results 1 - 20 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9164 5' -63.5 NC_002512.2 + 4659 0.7 0.417662
Target:  5'- -gCgGAGGCCC-CGCCGGCGcGUCg- -3'
miRNA:   3'- uaGgCUCCGGGaGCGGUCGCcCAGag -5'
9164 5' -63.5 NC_002512.2 + 8190 0.74 0.256935
Target:  5'- -cCCGAGGCCgagcgUCGCCgGGCGGGUgUCc -3'
miRNA:   3'- uaGGCUCCGGg----AGCGG-UCGCCCAgAG- -5'
9164 5' -63.5 NC_002512.2 + 11142 0.67 0.616785
Target:  5'- aGUCCGAGGgCCggacacgCGCUcGaCGGGUCg- -3'
miRNA:   3'- -UAGGCUCCgGGa------GCGGuC-GCCCAGag -5'
9164 5' -63.5 NC_002512.2 + 15682 0.66 0.63595
Target:  5'- -cCCGGGGCagCggGCgCAGCGGGUcCUCc -3'
miRNA:   3'- uaGGCUCCGg-GagCG-GUCGCCCA-GAG- -5'
9164 5' -63.5 NC_002512.2 + 19394 0.68 0.540998
Target:  5'- -gUCG-GGCCCUCGCCucGCGGaUCUg -3'
miRNA:   3'- uaGGCuCCGGGAGCGGu-CGCCcAGAg -5'
9164 5' -63.5 NC_002512.2 + 24677 0.67 0.569155
Target:  5'- cGUCCcGGGCCgCUCgGgCGG-GGGUCUCg -3'
miRNA:   3'- -UAGGcUCCGG-GAG-CgGUCgCCCAGAG- -5'
9164 5' -63.5 NC_002512.2 + 44651 0.66 0.675146
Target:  5'- -gUCGAGGCUCUCGCCcacgcguuccacgacGCGGGcCa- -3'
miRNA:   3'- uaGGCUCCGGGAGCGGu--------------CGCCCaGag -5'
9164 5' -63.5 NC_002512.2 + 59469 1.07 0.001216
Target:  5'- uAUCCGAGGCCCUCGCCAGCGGGUCUCg -3'
miRNA:   3'- -UAGGCUCCGGGAGCGGUCGCCCAGAG- -5'
9164 5' -63.5 NC_002512.2 + 64627 0.66 0.626365
Target:  5'- gGUCCGGGGCuCCgcgacgCGUCcGCGaGGUCg- -3'
miRNA:   3'- -UAGGCUCCG-GGa-----GCGGuCGC-CCAGag -5'
9164 5' -63.5 NC_002512.2 + 64671 0.71 0.355303
Target:  5'- -gCgGAGGUCCUCGCCGGgcCGGuUCUCg -3'
miRNA:   3'- uaGgCUCCGGGAGCGGUC--GCCcAGAG- -5'
9164 5' -63.5 NC_002512.2 + 72863 0.68 0.559724
Target:  5'- cUCCG-GGCCgCgUCGCCGuugucGCGGGgCUCg -3'
miRNA:   3'- uAGGCuCCGG-G-AGCGGU-----CGCCCaGAG- -5'
9164 5' -63.5 NC_002512.2 + 79565 0.67 0.578625
Target:  5'- -gCCGcGGCguCCUCGCC-GCcGGUCUCg -3'
miRNA:   3'- uaGGCuCCG--GGAGCGGuCGcCCAGAG- -5'
9164 5' -63.5 NC_002512.2 + 80046 0.67 0.607215
Target:  5'- -gUCGucGUCCUCGUCGcGCGGGUCg- -3'
miRNA:   3'- uaGGCucCGGGAGCGGU-CGCCCAGag -5'
9164 5' -63.5 NC_002512.2 + 81807 0.67 0.607214
Target:  5'- --aCGAGGgCCgacgCGCC-GCGaGGUCUCc -3'
miRNA:   3'- uagGCUCCgGGa---GCGGuCGC-CCAGAG- -5'
9164 5' -63.5 NC_002512.2 + 83106 0.71 0.370265
Target:  5'- gGUCCGGcGGUCCggCGUCGGuCGGGUCgUCg -3'
miRNA:   3'- -UAGGCU-CCGGGa-GCGGUC-GCCCAG-AG- -5'
9164 5' -63.5 NC_002512.2 + 83670 0.72 0.319793
Target:  5'- gGUCCaGGGUCCUCGCCAGCcucuugacGGUCgUCg -3'
miRNA:   3'- -UAGGcUCCGGGAGCGGUCGc-------CCAG-AG- -5'
9164 5' -63.5 NC_002512.2 + 86165 0.7 0.442706
Target:  5'- cUCCGAGGCCCU-GCU-GCGGGagCUg -3'
miRNA:   3'- uAGGCUCCGGGAgCGGuCGCCCa-GAg -5'
9164 5' -63.5 NC_002512.2 + 87837 0.73 0.268645
Target:  5'- -gCCGggcgucGGGCCCUCG-CGGCGGGUCg- -3'
miRNA:   3'- uaGGC------UCCGGGAGCgGUCGCCCAGag -5'
9164 5' -63.5 NC_002512.2 + 90088 0.73 0.287012
Target:  5'- -aCCGAGGCCCcCGCCGGCcuggaGGGUg-- -3'
miRNA:   3'- uaGGCUCCGGGaGCGGUCG-----CCCAgag -5'
9164 5' -63.5 NC_002512.2 + 91992 0.66 0.655104
Target:  5'- cGUCCGGGucuCCCgcgUCGCCGGCGGcGgaCUCg -3'
miRNA:   3'- -UAGGCUCc--GGG---AGCGGUCGCC-Ca-GAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.