miRNA display CGI


Results 1 - 20 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9164 5' -63.5 NC_002512.2 + 59469 1.07 0.001216
Target:  5'- uAUCCGAGGCCCUCGCCAGCGGGUCUCg -3'
miRNA:   3'- -UAGGCUCCGGGAGCGGUCGCCCAGAG- -5'
9164 5' -63.5 NC_002512.2 + 105033 0.76 0.190753
Target:  5'- cGUCCG-GGUCCUCGUC-GCGGGcCUCg -3'
miRNA:   3'- -UAGGCuCCGGGAGCGGuCGCCCaGAG- -5'
9164 5' -63.5 NC_002512.2 + 222230 0.74 0.245646
Target:  5'- -gUCGGGGCCgCguccuucgUCGCCguGGCGGGUCUCg -3'
miRNA:   3'- uaGGCUCCGG-G--------AGCGG--UCGCCCAGAG- -5'
9164 5' -63.5 NC_002512.2 + 196360 0.74 0.251238
Target:  5'- gGUCgGAGGCUC-CGCCGGCcGGG-CUCa -3'
miRNA:   3'- -UAGgCUCCGGGaGCGGUCG-CCCaGAG- -5'
9164 5' -63.5 NC_002512.2 + 8190 0.74 0.256935
Target:  5'- -cCCGAGGCCgagcgUCGCCgGGCGGGUgUCc -3'
miRNA:   3'- uaGGCUCCGGg----AGCGG-UCGCCCAgAG- -5'
9164 5' -63.5 NC_002512.2 + 226483 0.74 0.262737
Target:  5'- -gCCGGGGCCCgggcgcuccccUCGCC-GCGGGUCc- -3'
miRNA:   3'- uaGGCUCCGGG-----------AGCGGuCGCCCAGag -5'
9164 5' -63.5 NC_002512.2 + 87837 0.73 0.268645
Target:  5'- -gCCGggcgucGGGCCCUCG-CGGCGGGUCg- -3'
miRNA:   3'- uaGGC------UCCGGGAGCgGUCGCCCAGag -5'
9164 5' -63.5 NC_002512.2 + 152128 0.73 0.27466
Target:  5'- aGUCUGGGGgauCCUUCGCgAGCGGGUgUCc -3'
miRNA:   3'- -UAGGCUCC---GGGAGCGgUCGCCCAgAG- -5'
9164 5' -63.5 NC_002512.2 + 90088 0.73 0.287012
Target:  5'- -aCCGAGGCCCcCGCCGGCcuggaGGGUg-- -3'
miRNA:   3'- uaGGCUCCGGGaGCGGUCG-----CCCAgag -5'
9164 5' -63.5 NC_002512.2 + 83670 0.72 0.319793
Target:  5'- gGUCCaGGGUCCUCGCCAGCcucuugacGGUCgUCg -3'
miRNA:   3'- -UAGGcUCCGGGAGCGGUCGc-------CCAG-AG- -5'
9164 5' -63.5 NC_002512.2 + 101964 0.72 0.340773
Target:  5'- -cCCGcGGGCCC--GCCGGCGGG-CUCg -3'
miRNA:   3'- uaGGC-UCCGGGagCGGUCGCCCaGAG- -5'
9164 5' -63.5 NC_002512.2 + 64671 0.71 0.355303
Target:  5'- -gCgGAGGUCCUCGCCGGgcCGGuUCUCg -3'
miRNA:   3'- uaGgCUCCGGGAGCGGUC--GCCcAGAG- -5'
9164 5' -63.5 NC_002512.2 + 98567 0.71 0.355303
Target:  5'- gAUCCGgcGGGCgCCUCgGgCGGCGGGUCg- -3'
miRNA:   3'- -UAGGC--UCCG-GGAG-CgGUCGCCCAGag -5'
9164 5' -63.5 NC_002512.2 + 83106 0.71 0.370265
Target:  5'- gGUCCGGcGGUCCggCGUCGGuCGGGUCgUCg -3'
miRNA:   3'- -UAGGCU-CCGGGa-GCGGUC-GCCCAG-AG- -5'
9164 5' -63.5 NC_002512.2 + 173808 0.71 0.377905
Target:  5'- -aCUGGGGCUCcUGCguGCGGGUCUg -3'
miRNA:   3'- uaGGCUCCGGGaGCGguCGCCCAGAg -5'
9164 5' -63.5 NC_002512.2 + 179092 0.7 0.401453
Target:  5'- -gCCGGGGCCgaCGCCucGUGGGUCc- -3'
miRNA:   3'- uaGGCUCCGGgaGCGGu-CGCCCAGag -5'
9164 5' -63.5 NC_002512.2 + 155257 0.7 0.409508
Target:  5'- -cCCG-GGCCgUCGCgCGGCG-GUCUCg -3'
miRNA:   3'- uaGGCuCCGGgAGCG-GUCGCcCAGAG- -5'
9164 5' -63.5 NC_002512.2 + 4659 0.7 0.417662
Target:  5'- -gCgGAGGCCC-CGCCGGCGcGUCg- -3'
miRNA:   3'- uaGgCUCCGGGaGCGGUCGCcCAGag -5'
9164 5' -63.5 NC_002512.2 + 220974 0.7 0.434263
Target:  5'- -gCCGAGGCcgcCCUgGCCAGgaGGGUCg- -3'
miRNA:   3'- uaGGCUCCG---GGAgCGGUCg-CCCAGag -5'
9164 5' -63.5 NC_002512.2 + 186691 0.7 0.434263
Target:  5'- cGUCCGGaacucGGCCUUCGUCugcGGCGGGUUg- -3'
miRNA:   3'- -UAGGCU-----CCGGGAGCGG---UCGCCCAGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.