miRNA display CGI


Results 1 - 20 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9164 5' -63.5 NC_002512.2 + 99212 0.68 0.559724
Target:  5'- cUCCGcGGCCgC-CGCCGuGUGGGUCg- -3'
miRNA:   3'- uAGGCuCCGG-GaGCGGU-CGCCCAGag -5'
9164 5' -63.5 NC_002512.2 + 122798 0.69 0.486245
Target:  5'- -gCCG-GGCCCUgG-CGGCGGGUCc- -3'
miRNA:   3'- uaGGCuCCGGGAgCgGUCGCCCAGag -5'
9164 5' -63.5 NC_002512.2 + 123294 0.69 0.486245
Target:  5'- -gCCGGcuGGCCCgguUCGCCaagaAGCGGGUgUCc -3'
miRNA:   3'- uaGGCU--CCGGG---AGCGG----UCGCCCAgAG- -5'
9164 5' -63.5 NC_002512.2 + 139785 0.68 0.531713
Target:  5'- cGUCCGGcgcaCCCUCcagGCCGGCGGGggcCUCg -3'
miRNA:   3'- -UAGGCUcc--GGGAG---CGGUCGCCCa--GAG- -5'
9164 5' -63.5 NC_002512.2 + 108946 0.68 0.540998
Target:  5'- -aCCGccGCCCUUGCCcGuCGGGUCg- -3'
miRNA:   3'- uaGGCucCGGGAGCGGuC-GCCCAGag -5'
9164 5' -63.5 NC_002512.2 + 19394 0.68 0.540998
Target:  5'- -gUCG-GGCCCUCGCCucGCGGaUCUg -3'
miRNA:   3'- uaGGCuCCGGGAGCGGu-CGCCcAGAg -5'
9164 5' -63.5 NC_002512.2 + 104792 0.68 0.540998
Target:  5'- --gCGGGGUCCgCGCgCGGCGGGUUg- -3'
miRNA:   3'- uagGCUCCGGGaGCG-GUCGCCCAGag -5'
9164 5' -63.5 NC_002512.2 + 101197 0.68 0.550336
Target:  5'- uGUCCGAgacgccGGCgUUCGCCA--GGGUCUCc -3'
miRNA:   3'- -UAGGCU------CCGgGAGCGGUcgCCCAGAG- -5'
9164 5' -63.5 NC_002512.2 + 133980 0.68 0.550336
Target:  5'- -aUCGAGGUCCUCGUCGGCacccggccGGGcgacCUCg -3'
miRNA:   3'- uaGGCUCCGGGAGCGGUCG--------CCCa---GAG- -5'
9164 5' -63.5 NC_002512.2 + 105899 0.69 0.451241
Target:  5'- gGUCCGuguGGCUCUCcggcguCCGGUGGGUcCUCg -3'
miRNA:   3'- -UAGGCu--CCGGGAGc-----GGUCGCCCA-GAG- -5'
9164 5' -63.5 NC_002512.2 + 86165 0.7 0.442706
Target:  5'- cUCCGAGGCCCU-GCU-GCGGGagCUg -3'
miRNA:   3'- uAGGCUCCGGGAgCGGuCGCCCa-GAg -5'
9164 5' -63.5 NC_002512.2 + 4659 0.7 0.417662
Target:  5'- -gCgGAGGCCC-CGCCGGCGcGUCg- -3'
miRNA:   3'- uaGgCUCCGGGaGCGGUCGCcCAGag -5'
9164 5' -63.5 NC_002512.2 + 8190 0.74 0.256935
Target:  5'- -cCCGAGGCCgagcgUCGCCgGGCGGGUgUCc -3'
miRNA:   3'- uaGGCUCCGGg----AGCGG-UCGCCCAgAG- -5'
9164 5' -63.5 NC_002512.2 + 152128 0.73 0.27466
Target:  5'- aGUCUGGGGgauCCUUCGCgAGCGGGUgUCc -3'
miRNA:   3'- -UAGGCUCC---GGGAGCGgUCGCCCAgAG- -5'
9164 5' -63.5 NC_002512.2 + 83670 0.72 0.319793
Target:  5'- gGUCCaGGGUCCUCGCCAGCcucuugacGGUCgUCg -3'
miRNA:   3'- -UAGGcUCCGGGAGCGGUCGc-------CCAG-AG- -5'
9164 5' -63.5 NC_002512.2 + 101964 0.72 0.340773
Target:  5'- -cCCGcGGGCCC--GCCGGCGGG-CUCg -3'
miRNA:   3'- uaGGC-UCCGGGagCGGUCGCCCaGAG- -5'
9164 5' -63.5 NC_002512.2 + 64671 0.71 0.355303
Target:  5'- -gCgGAGGUCCUCGCCGGgcCGGuUCUCg -3'
miRNA:   3'- uaGgCUCCGGGAGCGGUC--GCCcAGAG- -5'
9164 5' -63.5 NC_002512.2 + 98567 0.71 0.355303
Target:  5'- gAUCCGgcGGGCgCCUCgGgCGGCGGGUCg- -3'
miRNA:   3'- -UAGGC--UCCG-GGAG-CgGUCGCCCAGag -5'
9164 5' -63.5 NC_002512.2 + 83106 0.71 0.370265
Target:  5'- gGUCCGGcGGUCCggCGUCGGuCGGGUCgUCg -3'
miRNA:   3'- -UAGGCU-CCGGGa-GCGGUC-GCCCAG-AG- -5'
9164 5' -63.5 NC_002512.2 + 173808 0.71 0.377905
Target:  5'- -aCUGGGGCUCcUGCguGCGGGUCUg -3'
miRNA:   3'- uaGGCUCCGGGaGCGguCGCCCAGAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.