Results 21 - 40 of 84 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9167 | 3' | -51.8 | NC_002512.2 | + | 95798 | 0.71 | 0.938092 |
Target: 5'- aGGCGCCGg--GGCGCGGAUCCg--- -3' miRNA: 3'- gCUGUGGCacuUUGCGUCUAGGagag -5' |
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9167 | 3' | -51.8 | NC_002512.2 | + | 13101 | 0.71 | 0.94719 |
Target: 5'- aCGACGCCGUGuucugccuGGCGCucgguaacauGAUCCaCUCg -3' miRNA: 3'- -GCUGUGGCACu-------UUGCGu---------CUAGGaGAG- -5' |
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9167 | 3' | -51.8 | NC_002512.2 | + | 151881 | 0.7 | 0.962622 |
Target: 5'- gGGCGCCGgcGAucCGCGGAUCgUUUCc -3' miRNA: 3'- gCUGUGGCa-CUuuGCGUCUAGgAGAG- -5' |
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9167 | 3' | -51.8 | NC_002512.2 | + | 71101 | 0.7 | 0.955357 |
Target: 5'- aCGACGCCccgGGccaccAGCGCcaGGAUCUUCUCg -3' miRNA: 3'- -GCUGUGGca-CU-----UUGCG--UCUAGGAGAG- -5' |
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9167 | 3' | -51.8 | NC_002512.2 | + | 220054 | 0.69 | 0.974598 |
Target: 5'- uCGACAuggcuccgcCCGaGAcucuGGCGCGGAUCCUCa- -3' miRNA: 3'- -GCUGU---------GGCaCU----UUGCGUCUAGGAGag -5' |
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9167 | 3' | -51.8 | NC_002512.2 | + | 27149 | 0.69 | 0.977095 |
Target: 5'- uGACAUCGUGuc-CGCGGAUgagagcggacCCUUUCg -3' miRNA: 3'- gCUGUGGCACuuuGCGUCUA----------GGAGAG- -5' |
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9167 | 3' | -51.8 | NC_002512.2 | + | 41561 | 0.69 | 0.977095 |
Target: 5'- -uGCACgGUGgcGCGCAGGUUCUugacCUCg -3' miRNA: 3'- gcUGUGgCACuuUGCGUCUAGGA----GAG- -5' |
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9167 | 3' | -51.8 | NC_002512.2 | + | 94554 | 0.69 | 0.974598 |
Target: 5'- -aGCGCCGUGAucaGCAGGUUCUUg- -3' miRNA: 3'- gcUGUGGCACUuugCGUCUAGGAGag -5' |
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9167 | 3' | -51.8 | NC_002512.2 | + | 114528 | 0.68 | 0.988453 |
Target: 5'- aCGACGCCGgcgucuucACGCcGAUCUUCUg -3' miRNA: 3'- -GCUGUGGCacuu----UGCGuCUAGGAGAg -5' |
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9167 | 3' | -51.8 | NC_002512.2 | + | 220111 | 0.68 | 0.986951 |
Target: 5'- aGGCGuCCGUGAGccgccacgcgggGCgGCGGGUCCggCUCc -3' miRNA: 3'- gCUGU-GGCACUU------------UG-CGUCUAGGa-GAG- -5' |
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9167 | 3' | -51.8 | NC_002512.2 | + | 191810 | 0.68 | 0.988453 |
Target: 5'- gGACACCGggcacUGAcGCGCgcgGGGUCCUUg- -3' miRNA: 3'- gCUGUGGC-----ACUuUGCG---UCUAGGAGag -5' |
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9167 | 3' | -51.8 | NC_002512.2 | + | 105870 | 0.68 | 0.988453 |
Target: 5'- gGACGCa--GgcGCGCGGGUCCgUCUCc -3' miRNA: 3'- gCUGUGgcaCuuUGCGUCUAGG-AGAG- -5' |
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9167 | 3' | -51.8 | NC_002512.2 | + | 14832 | 0.68 | 0.988453 |
Target: 5'- aGACGCCGccGAcGACGguGAgcUCCUCg- -3' miRNA: 3'- gCUGUGGCa-CU-UUGCguCU--AGGAGag -5' |
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9167 | 3' | -51.8 | NC_002512.2 | + | 121736 | 0.68 | 0.986951 |
Target: 5'- gCGACGCCGgagGAGucggagucuucGCGCg---CCUCUCg -3' miRNA: 3'- -GCUGUGGCa--CUU-----------UGCGucuaGGAGAG- -5' |
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9167 | 3' | -51.8 | NC_002512.2 | + | 159295 | 0.68 | 0.98154 |
Target: 5'- -aACACCGUGAGACGUg---CCUCg- -3' miRNA: 3'- gcUGUGGCACUUUGCGucuaGGAGag -5' |
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9167 | 3' | -51.8 | NC_002512.2 | + | 60564 | 0.68 | 0.985981 |
Target: 5'- ---gGCCGUGGAACGCgAuuucuggcuguacgcGAUCCUCUUc -3' miRNA: 3'- gcugUGGCACUUUGCG-U---------------CUAGGAGAG- -5' |
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9167 | 3' | -51.8 | NC_002512.2 | + | 128266 | 0.68 | 0.985304 |
Target: 5'- cCGACggguccGCCGUc--ACcCAGAUCCUCUCg -3' miRNA: 3'- -GCUG------UGGCAcuuUGcGUCUAGGAGAG- -5' |
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9167 | 3' | -51.8 | NC_002512.2 | + | 109739 | 0.68 | 0.983503 |
Target: 5'- ---gGCCG-GuuGCGCGGGUCCUCg- -3' miRNA: 3'- gcugUGGCaCuuUGCGUCUAGGAGag -5' |
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9167 | 3' | -51.8 | NC_002512.2 | + | 31568 | 0.68 | 0.983503 |
Target: 5'- gGACGCCGUGAAcgGCcuGAUCCUa-- -3' miRNA: 3'- gCUGUGGCACUUugCGu-CUAGGAgag -5' |
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9167 | 3' | -51.8 | NC_002512.2 | + | 221838 | 0.68 | 0.988453 |
Target: 5'- cCGAC-CCGcgGggGCGCcucgggaccgGGA-CCUCUCg -3' miRNA: 3'- -GCUGuGGCa-CuuUGCG----------UCUaGGAGAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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