miRNA display CGI


Results 21 - 40 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9167 3' -51.8 NC_002512.2 + 77049 0.67 0.992164
Target:  5'- uCGACAaucUCGUGgcGCuGCuGAUCCUgCUCg -3'
miRNA:   3'- -GCUGU---GGCACuuUG-CGuCUAGGA-GAG- -5'
9167 3' -51.8 NC_002512.2 + 80033 0.66 0.997232
Target:  5'- gGAC-CCGUGAAAa--AGAUCCccaUCUCc -3'
miRNA:   3'- gCUGuGGCACUUUgcgUCUAGG---AGAG- -5'
9167 3' -51.8 NC_002512.2 + 81157 0.72 0.911197
Target:  5'- cCGGC-UCGUGggGCGCuu-UCCUCUUg -3'
miRNA:   3'- -GCUGuGGCACuuUGCGucuAGGAGAG- -5'
9167 3' -51.8 NC_002512.2 + 82484 0.8 0.519699
Target:  5'- aGACGCCGUuuGACGCcGGUCCUCUg -3'
miRNA:   3'- gCUGUGGCAcuUUGCGuCUAGGAGAg -5'
9167 3' -51.8 NC_002512.2 + 87716 0.72 0.898783
Target:  5'- aGACGCCGcGAGACGgc--UCCUCUCg -3'
miRNA:   3'- gCUGUGGCaCUUUGCgucuAGGAGAG- -5'
9167 3' -51.8 NC_002512.2 + 92643 0.73 0.856131
Target:  5'- cCGGCGCCG-GGAcccGCGCGGAUCCg--- -3'
miRNA:   3'- -GCUGUGGCaCUU---UGCGUCUAGGagag -5'
9167 3' -51.8 NC_002512.2 + 92712 0.66 0.997232
Target:  5'- aCGACGCCGUacggacguccggGggGCGCGcucGGUCCg--- -3'
miRNA:   3'- -GCUGUGGCA------------CuuUGCGU---CUAGGagag -5'
9167 3' -51.8 NC_002512.2 + 94554 0.69 0.974598
Target:  5'- -aGCGCCGUGAucaGCAGGUUCUUg- -3'
miRNA:   3'- gcUGUGGCACUuugCGUCUAGGAGag -5'
9167 3' -51.8 NC_002512.2 + 95666 0.66 0.997656
Target:  5'- -aACGCCGUGggGCuGUAGGgggCCUUcaggUCg -3'
miRNA:   3'- gcUGUGGCACuuUG-CGUCUa--GGAG----AG- -5'
9167 3' -51.8 NC_002512.2 + 95798 0.71 0.938092
Target:  5'- aGGCGCCGg--GGCGCGGAUCCg--- -3'
miRNA:   3'- gCUGUGGCacuUUGCGUCUAGGagag -5'
9167 3' -51.8 NC_002512.2 + 99450 0.66 0.996696
Target:  5'- aCGACcuggaagGCC-UGGAugGCGGucuUCCUCUUc -3'
miRNA:   3'- -GCUG-------UGGcACUUugCGUCu--AGGAGAG- -5'
9167 3' -51.8 NC_002512.2 + 101868 0.68 0.980918
Target:  5'- uCGACGCCGgggcgGGucuguucugccucgGGCGCG--UCCUCUCg -3'
miRNA:   3'- -GCUGUGGCa----CU--------------UUGCGUcuAGGAGAG- -5'
9167 3' -51.8 NC_002512.2 + 102555 0.66 0.996195
Target:  5'- cCGACugCGUGuauuugagcaaGGACGCccuGGucuccAUCCUCUCc -3'
miRNA:   3'- -GCUGugGCAC-----------UUUGCG---UC-----UAGGAGAG- -5'
9167 3' -51.8 NC_002512.2 + 103426 0.67 0.992577
Target:  5'- aGACGCCGUcgaacgcgucgucccGGuccgAGCGCGGGUCCgaggacgcggCUCg -3'
miRNA:   3'- gCUGUGGCA---------------CU----UUGCGUCUAGGa---------GAG- -5'
9167 3' -51.8 NC_002512.2 + 105870 0.68 0.988453
Target:  5'- gGACGCa--GgcGCGCGGGUCCgUCUCc -3'
miRNA:   3'- gCUGUGgcaCuuUGCGUCUAGG-AGAG- -5'
9167 3' -51.8 NC_002512.2 + 106020 0.78 0.61001
Target:  5'- gCGGCGCCGccgGGggUGCGGcGUCCUCUCc -3'
miRNA:   3'- -GCUGUGGCa--CUuuGCGUC-UAGGAGAG- -5'
9167 3' -51.8 NC_002512.2 + 107240 0.67 0.989686
Target:  5'- gCGGCGCCGUcagcaccGAGugGCGG-UCCgcgUUCa -3'
miRNA:   3'- -GCUGUGGCA-------CUUugCGUCuAGGa--GAG- -5'
9167 3' -51.8 NC_002512.2 + 109095 0.73 0.863022
Target:  5'- uCGACACCGUGGccgucAGCGCcaggcugAGGgucugCCUCUCc -3'
miRNA:   3'- -GCUGUGGCACU-----UUGCG-------UCUa----GGAGAG- -5'
9167 3' -51.8 NC_002512.2 + 109739 0.68 0.983503
Target:  5'- ---gGCCG-GuuGCGCGGGUCCUCg- -3'
miRNA:   3'- gcugUGGCaCuuUGCGUCUAGGAGag -5'
9167 3' -51.8 NC_002512.2 + 112311 0.66 0.997232
Target:  5'- uCGAUGCCGgu-GACGUAGGUCagCUCc -3'
miRNA:   3'- -GCUGUGGCacuUUGCGUCUAGgaGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.