Results 21 - 40 of 84 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9167 | 3' | -51.8 | NC_002512.2 | + | 77049 | 0.67 | 0.992164 |
Target: 5'- uCGACAaucUCGUGgcGCuGCuGAUCCUgCUCg -3' miRNA: 3'- -GCUGU---GGCACuuUG-CGuCUAGGA-GAG- -5' |
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9167 | 3' | -51.8 | NC_002512.2 | + | 80033 | 0.66 | 0.997232 |
Target: 5'- gGAC-CCGUGAAAa--AGAUCCccaUCUCc -3' miRNA: 3'- gCUGuGGCACUUUgcgUCUAGG---AGAG- -5' |
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9167 | 3' | -51.8 | NC_002512.2 | + | 81157 | 0.72 | 0.911197 |
Target: 5'- cCGGC-UCGUGggGCGCuu-UCCUCUUg -3' miRNA: 3'- -GCUGuGGCACuuUGCGucuAGGAGAG- -5' |
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9167 | 3' | -51.8 | NC_002512.2 | + | 82484 | 0.8 | 0.519699 |
Target: 5'- aGACGCCGUuuGACGCcGGUCCUCUg -3' miRNA: 3'- gCUGUGGCAcuUUGCGuCUAGGAGAg -5' |
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9167 | 3' | -51.8 | NC_002512.2 | + | 87716 | 0.72 | 0.898783 |
Target: 5'- aGACGCCGcGAGACGgc--UCCUCUCg -3' miRNA: 3'- gCUGUGGCaCUUUGCgucuAGGAGAG- -5' |
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9167 | 3' | -51.8 | NC_002512.2 | + | 92643 | 0.73 | 0.856131 |
Target: 5'- cCGGCGCCG-GGAcccGCGCGGAUCCg--- -3' miRNA: 3'- -GCUGUGGCaCUU---UGCGUCUAGGagag -5' |
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9167 | 3' | -51.8 | NC_002512.2 | + | 92712 | 0.66 | 0.997232 |
Target: 5'- aCGACGCCGUacggacguccggGggGCGCGcucGGUCCg--- -3' miRNA: 3'- -GCUGUGGCA------------CuuUGCGU---CUAGGagag -5' |
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9167 | 3' | -51.8 | NC_002512.2 | + | 94554 | 0.69 | 0.974598 |
Target: 5'- -aGCGCCGUGAucaGCAGGUUCUUg- -3' miRNA: 3'- gcUGUGGCACUuugCGUCUAGGAGag -5' |
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9167 | 3' | -51.8 | NC_002512.2 | + | 95666 | 0.66 | 0.997656 |
Target: 5'- -aACGCCGUGggGCuGUAGGgggCCUUcaggUCg -3' miRNA: 3'- gcUGUGGCACuuUG-CGUCUa--GGAG----AG- -5' |
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9167 | 3' | -51.8 | NC_002512.2 | + | 95798 | 0.71 | 0.938092 |
Target: 5'- aGGCGCCGg--GGCGCGGAUCCg--- -3' miRNA: 3'- gCUGUGGCacuUUGCGUCUAGGagag -5' |
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9167 | 3' | -51.8 | NC_002512.2 | + | 99450 | 0.66 | 0.996696 |
Target: 5'- aCGACcuggaagGCC-UGGAugGCGGucuUCCUCUUc -3' miRNA: 3'- -GCUG-------UGGcACUUugCGUCu--AGGAGAG- -5' |
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9167 | 3' | -51.8 | NC_002512.2 | + | 101868 | 0.68 | 0.980918 |
Target: 5'- uCGACGCCGgggcgGGucuguucugccucgGGCGCG--UCCUCUCg -3' miRNA: 3'- -GCUGUGGCa----CU--------------UUGCGUcuAGGAGAG- -5' |
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9167 | 3' | -51.8 | NC_002512.2 | + | 102555 | 0.66 | 0.996195 |
Target: 5'- cCGACugCGUGuauuugagcaaGGACGCccuGGucuccAUCCUCUCc -3' miRNA: 3'- -GCUGugGCAC-----------UUUGCG---UC-----UAGGAGAG- -5' |
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9167 | 3' | -51.8 | NC_002512.2 | + | 103426 | 0.67 | 0.992577 |
Target: 5'- aGACGCCGUcgaacgcgucgucccGGuccgAGCGCGGGUCCgaggacgcggCUCg -3' miRNA: 3'- gCUGUGGCA---------------CU----UUGCGUCUAGGa---------GAG- -5' |
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9167 | 3' | -51.8 | NC_002512.2 | + | 105870 | 0.68 | 0.988453 |
Target: 5'- gGACGCa--GgcGCGCGGGUCCgUCUCc -3' miRNA: 3'- gCUGUGgcaCuuUGCGUCUAGG-AGAG- -5' |
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9167 | 3' | -51.8 | NC_002512.2 | + | 106020 | 0.78 | 0.61001 |
Target: 5'- gCGGCGCCGccgGGggUGCGGcGUCCUCUCc -3' miRNA: 3'- -GCUGUGGCa--CUuuGCGUC-UAGGAGAG- -5' |
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9167 | 3' | -51.8 | NC_002512.2 | + | 107240 | 0.67 | 0.989686 |
Target: 5'- gCGGCGCCGUcagcaccGAGugGCGG-UCCgcgUUCa -3' miRNA: 3'- -GCUGUGGCA-------CUUugCGUCuAGGa--GAG- -5' |
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9167 | 3' | -51.8 | NC_002512.2 | + | 109095 | 0.73 | 0.863022 |
Target: 5'- uCGACACCGUGGccgucAGCGCcaggcugAGGgucugCCUCUCc -3' miRNA: 3'- -GCUGUGGCACU-----UUGCG-------UCUa----GGAGAG- -5' |
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9167 | 3' | -51.8 | NC_002512.2 | + | 109739 | 0.68 | 0.983503 |
Target: 5'- ---gGCCG-GuuGCGCGGGUCCUCg- -3' miRNA: 3'- gcugUGGCaCuuUGCGUCUAGGAGag -5' |
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9167 | 3' | -51.8 | NC_002512.2 | + | 112311 | 0.66 | 0.997232 |
Target: 5'- uCGAUGCCGgu-GACGUAGGUCagCUCc -3' miRNA: 3'- -GCUGUGGCacuUUGCGUCUAGgaGAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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