miRNA display CGI


Results 21 - 40 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9167 3' -51.8 NC_002512.2 + 169184 0.66 0.994859
Target:  5'- ---gACCGUGAAGUGCGGGUCCa--- -3'
miRNA:   3'- gcugUGGCACUUUGCGUCUAGGagag -5'
9167 3' -51.8 NC_002512.2 + 163331 0.77 0.681377
Target:  5'- aGACACUGUcuGGACGguGGUCCUCUUc -3'
miRNA:   3'- gCUGUGGCAc-UUUGCguCUAGGAGAG- -5'
9167 3' -51.8 NC_002512.2 + 159295 0.68 0.98154
Target:  5'- -aACACCGUGAGACGUg---CCUCg- -3'
miRNA:   3'- gcUGUGGCACUUUGCGucuaGGAGag -5'
9167 3' -51.8 NC_002512.2 + 158926 0.66 0.997656
Target:  5'- aCGGCuuCGgcgGggGCGCcGGcggCCUCUCg -3'
miRNA:   3'- -GCUGugGCa--CuuUGCGuCUa--GGAGAG- -5'
9167 3' -51.8 NC_002512.2 + 155815 0.72 0.905107
Target:  5'- gGAgGCCGUGuccgUGCAGAUCCgCUCc -3'
miRNA:   3'- gCUgUGGCACuuu-GCGUCUAGGaGAG- -5'
9167 3' -51.8 NC_002512.2 + 155378 0.72 0.917052
Target:  5'- gCGGgACCGcGAGGCugGCgAGGUCCUCUCc -3'
miRNA:   3'- -GCUgUGGCaCUUUG--CG-UCUAGGAGAG- -5'
9167 3' -51.8 NC_002512.2 + 152497 0.66 0.995568
Target:  5'- aCGGCGCCacggGUGGAGCGUuccgGGGUCggggUCUCg -3'
miRNA:   3'- -GCUGUGG----CACUUUGCG----UCUAGg---AGAG- -5'
9167 3' -51.8 NC_002512.2 + 151881 0.7 0.962622
Target:  5'- gGGCGCCGgcGAucCGCGGAUCgUUUCc -3'
miRNA:   3'- gCUGUGGCa-CUuuGCGUCUAGgAGAG- -5'
9167 3' -51.8 NC_002512.2 + 144294 0.66 0.996195
Target:  5'- aGGCACCc--GAACGCGGAcgCgCUCUCc -3'
miRNA:   3'- gCUGUGGcacUUUGCGUCUa-G-GAGAG- -5'
9167 3' -51.8 NC_002512.2 + 140758 0.74 0.823592
Target:  5'- aGACGCCGUGuga-GCAGGcCCUCUa -3'
miRNA:   3'- gCUGUGGCACuuugCGUCUaGGAGAg -5'
9167 3' -51.8 NC_002512.2 + 140055 0.73 0.870481
Target:  5'- ---gGCCGUGcAGCGCGGucucgacGUCCUCUCg -3'
miRNA:   3'- gcugUGGCACuUUGCGUC-------UAGGAGAG- -5'
9167 3' -51.8 NC_002512.2 + 139543 0.67 0.992164
Target:  5'- gGACugCGUGAucacgggcagcACGguGAUCUcCUCg -3'
miRNA:   3'- gCUGugGCACUu----------UGCguCUAGGaGAG- -5'
9167 3' -51.8 NC_002512.2 + 134687 0.66 0.997232
Target:  5'- gGACGCgCGac---CGCGGAcgUCCUCUCg -3'
miRNA:   3'- gCUGUG-GCacuuuGCGUCU--AGGAGAG- -5'
9167 3' -51.8 NC_002512.2 + 133776 0.66 0.995568
Target:  5'- uCGACACCcagGUGGccCGCgAGAUCUUCg- -3'
miRNA:   3'- -GCUGUGG---CACUuuGCG-UCUAGGAGag -5'
9167 3' -51.8 NC_002512.2 + 131925 0.66 0.996643
Target:  5'- cCGGCGCCccugcugcacgGGAGCGUAGAaCCUCa- -3'
miRNA:   3'- -GCUGUGGca---------CUUUGCGUCUaGGAGag -5'
9167 3' -51.8 NC_002512.2 + 128266 0.68 0.985304
Target:  5'- cCGACggguccGCCGUc--ACcCAGAUCCUCUCg -3'
miRNA:   3'- -GCUG------UGGCAcuuUGcGUCUAGGAGAG- -5'
9167 3' -51.8 NC_002512.2 + 126494 0.66 0.997656
Target:  5'- uCGugGCCccGGAGCGCgAGcgCCUCg- -3'
miRNA:   3'- -GCugUGGcaCUUUGCG-UCuaGGAGag -5'
9167 3' -51.8 NC_002512.2 + 126410 0.66 0.994859
Target:  5'- gGGCGCCGUc-GACGCcg--CCUCUCc -3'
miRNA:   3'- gCUGUGGCAcuUUGCGucuaGGAGAG- -5'
9167 3' -51.8 NC_002512.2 + 125022 0.67 0.991051
Target:  5'- uCGGCGCCGcccgcuGCGCgAGGUCC-CUCc -3'
miRNA:   3'- -GCUGUGGCacuu--UGCG-UCUAGGaGAG- -5'
9167 3' -51.8 NC_002512.2 + 121736 0.68 0.986951
Target:  5'- gCGACGCCGgagGAGucggagucuucGCGCg---CCUCUCg -3'
miRNA:   3'- -GCUGUGGCa--CUU-----------UGCGucuaGGAGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.