Results 1 - 20 of 84 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9167 | 3' | -51.8 | NC_002512.2 | + | 2060 | 0.67 | 0.99406 |
Target: 5'- gCGGCGCCagcgGGAGCGCGGAgUCCa--- -3' miRNA: 3'- -GCUGUGGca--CUUUGCGUCU-AGGagag -5' |
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9167 | 3' | -51.8 | NC_002512.2 | + | 8748 | 0.66 | 0.995568 |
Target: 5'- uCGACGaCG-GGGACGCGG-UCCUCa- -3' miRNA: 3'- -GCUGUgGCaCUUUGCGUCuAGGAGag -5' |
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9167 | 3' | -51.8 | NC_002512.2 | + | 13101 | 0.71 | 0.94719 |
Target: 5'- aCGACGCCGUGuucugccuGGCGCucgguaacauGAUCCaCUCg -3' miRNA: 3'- -GCUGUGGCACu-------UUGCGu---------CUAGGaGAG- -5' |
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9167 | 3' | -51.8 | NC_002512.2 | + | 14832 | 0.68 | 0.988453 |
Target: 5'- aGACGCCGccGAcGACGguGAgcUCCUCg- -3' miRNA: 3'- gCUGUGGCa-CU-UUGCguCU--AGGAGag -5' |
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9167 | 3' | -51.8 | NC_002512.2 | + | 15415 | 0.67 | 0.99406 |
Target: 5'- aGACGCCGcggugGAAGCaGUAGAcggCCUCg- -3' miRNA: 3'- gCUGUGGCa----CUUUG-CGUCUa--GGAGag -5' |
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9167 | 3' | -51.8 | NC_002512.2 | + | 27149 | 0.69 | 0.977095 |
Target: 5'- uGACAUCGUGuc-CGCGGAUgagagcggacCCUUUCg -3' miRNA: 3'- gCUGUGGCACuuuGCGUCUA----------GGAGAG- -5' |
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9167 | 3' | -51.8 | NC_002512.2 | + | 31568 | 0.68 | 0.983503 |
Target: 5'- gGACGCCGUGAAcgGCcuGAUCCUa-- -3' miRNA: 3'- gCUGUGGCACUUugCGu-CUAGGAgag -5' |
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9167 | 3' | -51.8 | NC_002512.2 | + | 32766 | 0.75 | 0.778157 |
Target: 5'- gGGCGCCGaUGAucucgaaGGCGCAGGacaUCCUCUUg -3' miRNA: 3'- gCUGUGGC-ACU-------UUGCGUCU---AGGAGAG- -5' |
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9167 | 3' | -51.8 | NC_002512.2 | + | 36758 | 0.66 | 0.996748 |
Target: 5'- gGACgACCGUGAcgucgggccgGACGCAG---CUCUCc -3' miRNA: 3'- gCUG-UGGCACU----------UUGCGUCuagGAGAG- -5' |
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9167 | 3' | -51.8 | NC_002512.2 | + | 37753 | 0.74 | 0.823592 |
Target: 5'- aCGACgGCCGcagaacgGAGACGCGGAgggUCCUCUg -3' miRNA: 3'- -GCUG-UGGCa------CUUUGCGUCU---AGGAGAg -5' |
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9167 | 3' | -51.8 | NC_002512.2 | + | 41140 | 0.66 | 0.996195 |
Target: 5'- gGACACCaUGAAACuGguGAUCUugugcugCUCg -3' miRNA: 3'- gCUGUGGcACUUUG-CguCUAGGa------GAG- -5' |
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9167 | 3' | -51.8 | NC_002512.2 | + | 41561 | 0.69 | 0.977095 |
Target: 5'- -uGCACgGUGgcGCGCAGGUUCUugacCUCg -3' miRNA: 3'- gcUGUGgCACuuUGCGUCUAGGA----GAG- -5' |
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9167 | 3' | -51.8 | NC_002512.2 | + | 43022 | 0.73 | 0.87844 |
Target: 5'- aGGCGuuGggcaggucGAGGCGCAGGUCCUCg- -3' miRNA: 3'- gCUGUggCa-------CUUUGCGUCUAGGAGag -5' |
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9167 | 3' | -51.8 | NC_002512.2 | + | 45815 | 0.76 | 0.750735 |
Target: 5'- aCGACACCGUGAugcCGUGGGcuUCgUCUCa -3' miRNA: 3'- -GCUGUGGCACUuu-GCGUCU--AGgAGAG- -5' |
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9167 | 3' | -51.8 | NC_002512.2 | + | 55246 | 1.1 | 0.010697 |
Target: 5'- cCGACACCGUGAAACGCAGAUCCUCUCc -3' miRNA: 3'- -GCUGUGGCACUUUGCGUCUAGGAGAG- -5' |
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9167 | 3' | -51.8 | NC_002512.2 | + | 58810 | 0.66 | 0.995568 |
Target: 5'- uGACgGCCGUGAAGaGCcucAUCUUCUCg -3' miRNA: 3'- gCUG-UGGCACUUUgCGuc-UAGGAGAG- -5' |
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9167 | 3' | -51.8 | NC_002512.2 | + | 60564 | 0.68 | 0.985981 |
Target: 5'- ---gGCCGUGGAACGCgAuuucuggcuguacgcGAUCCUCUUc -3' miRNA: 3'- gcugUGGCACUUUGCG-U---------------CUAGGAGAG- -5' |
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9167 | 3' | -51.8 | NC_002512.2 | + | 71101 | 0.7 | 0.955357 |
Target: 5'- aCGACGCCccgGGccaccAGCGCcaGGAUCUUCUCg -3' miRNA: 3'- -GCUGUGGca-CU-----UUGCG--UCUAGGAGAG- -5' |
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9167 | 3' | -51.8 | NC_002512.2 | + | 75542 | 0.72 | 0.917052 |
Target: 5'- uCGACGCCGUGGcggaggacgacGACGCGGAcgacUCCggaUCc -3' miRNA: 3'- -GCUGUGGCACU-----------UUGCGUCU----AGGag-AG- -5' |
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9167 | 3' | -51.8 | NC_002512.2 | + | 76026 | 0.66 | 0.994859 |
Target: 5'- aGGCGCCGac-GACGCGGAcgacgccuucUCCUuCUCc -3' miRNA: 3'- gCUGUGGCacuUUGCGUCU----------AGGA-GAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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