miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9167 3' -51.8 NC_002512.2 + 2060 0.67 0.99406
Target:  5'- gCGGCGCCagcgGGAGCGCGGAgUCCa--- -3'
miRNA:   3'- -GCUGUGGca--CUUUGCGUCU-AGGagag -5'
9167 3' -51.8 NC_002512.2 + 8748 0.66 0.995568
Target:  5'- uCGACGaCG-GGGACGCGG-UCCUCa- -3'
miRNA:   3'- -GCUGUgGCaCUUUGCGUCuAGGAGag -5'
9167 3' -51.8 NC_002512.2 + 13101 0.71 0.94719
Target:  5'- aCGACGCCGUGuucugccuGGCGCucgguaacauGAUCCaCUCg -3'
miRNA:   3'- -GCUGUGGCACu-------UUGCGu---------CUAGGaGAG- -5'
9167 3' -51.8 NC_002512.2 + 14832 0.68 0.988453
Target:  5'- aGACGCCGccGAcGACGguGAgcUCCUCg- -3'
miRNA:   3'- gCUGUGGCa-CU-UUGCguCU--AGGAGag -5'
9167 3' -51.8 NC_002512.2 + 15415 0.67 0.99406
Target:  5'- aGACGCCGcggugGAAGCaGUAGAcggCCUCg- -3'
miRNA:   3'- gCUGUGGCa----CUUUG-CGUCUa--GGAGag -5'
9167 3' -51.8 NC_002512.2 + 27149 0.69 0.977095
Target:  5'- uGACAUCGUGuc-CGCGGAUgagagcggacCCUUUCg -3'
miRNA:   3'- gCUGUGGCACuuuGCGUCUA----------GGAGAG- -5'
9167 3' -51.8 NC_002512.2 + 31568 0.68 0.983503
Target:  5'- gGACGCCGUGAAcgGCcuGAUCCUa-- -3'
miRNA:   3'- gCUGUGGCACUUugCGu-CUAGGAgag -5'
9167 3' -51.8 NC_002512.2 + 32766 0.75 0.778157
Target:  5'- gGGCGCCGaUGAucucgaaGGCGCAGGacaUCCUCUUg -3'
miRNA:   3'- gCUGUGGC-ACU-------UUGCGUCU---AGGAGAG- -5'
9167 3' -51.8 NC_002512.2 + 36758 0.66 0.996748
Target:  5'- gGACgACCGUGAcgucgggccgGACGCAG---CUCUCc -3'
miRNA:   3'- gCUG-UGGCACU----------UUGCGUCuagGAGAG- -5'
9167 3' -51.8 NC_002512.2 + 37753 0.74 0.823592
Target:  5'- aCGACgGCCGcagaacgGAGACGCGGAgggUCCUCUg -3'
miRNA:   3'- -GCUG-UGGCa------CUUUGCGUCU---AGGAGAg -5'
9167 3' -51.8 NC_002512.2 + 41140 0.66 0.996195
Target:  5'- gGACACCaUGAAACuGguGAUCUugugcugCUCg -3'
miRNA:   3'- gCUGUGGcACUUUG-CguCUAGGa------GAG- -5'
9167 3' -51.8 NC_002512.2 + 41561 0.69 0.977095
Target:  5'- -uGCACgGUGgcGCGCAGGUUCUugacCUCg -3'
miRNA:   3'- gcUGUGgCACuuUGCGUCUAGGA----GAG- -5'
9167 3' -51.8 NC_002512.2 + 43022 0.73 0.87844
Target:  5'- aGGCGuuGggcaggucGAGGCGCAGGUCCUCg- -3'
miRNA:   3'- gCUGUggCa-------CUUUGCGUCUAGGAGag -5'
9167 3' -51.8 NC_002512.2 + 45815 0.76 0.750735
Target:  5'- aCGACACCGUGAugcCGUGGGcuUCgUCUCa -3'
miRNA:   3'- -GCUGUGGCACUuu-GCGUCU--AGgAGAG- -5'
9167 3' -51.8 NC_002512.2 + 55246 1.1 0.010697
Target:  5'- cCGACACCGUGAAACGCAGAUCCUCUCc -3'
miRNA:   3'- -GCUGUGGCACUUUGCGUCUAGGAGAG- -5'
9167 3' -51.8 NC_002512.2 + 58810 0.66 0.995568
Target:  5'- uGACgGCCGUGAAGaGCcucAUCUUCUCg -3'
miRNA:   3'- gCUG-UGGCACUUUgCGuc-UAGGAGAG- -5'
9167 3' -51.8 NC_002512.2 + 60564 0.68 0.985981
Target:  5'- ---gGCCGUGGAACGCgAuuucuggcuguacgcGAUCCUCUUc -3'
miRNA:   3'- gcugUGGCACUUUGCG-U---------------CUAGGAGAG- -5'
9167 3' -51.8 NC_002512.2 + 71101 0.7 0.955357
Target:  5'- aCGACGCCccgGGccaccAGCGCcaGGAUCUUCUCg -3'
miRNA:   3'- -GCUGUGGca-CU-----UUGCG--UCUAGGAGAG- -5'
9167 3' -51.8 NC_002512.2 + 75542 0.72 0.917052
Target:  5'- uCGACGCCGUGGcggaggacgacGACGCGGAcgacUCCggaUCc -3'
miRNA:   3'- -GCUGUGGCACU-----------UUGCGUCU----AGGag-AG- -5'
9167 3' -51.8 NC_002512.2 + 76026 0.66 0.994859
Target:  5'- aGGCGCCGac-GACGCGGAcgacgccuucUCCUuCUCc -3'
miRNA:   3'- gCUGUGGCacuUUGCGUCU----------AGGA-GAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.