miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9167 3' -51.8 NC_002512.2 + 121736 0.68 0.986951
Target:  5'- gCGACGCCGgagGAGucggagucuucGCGCg---CCUCUCg -3'
miRNA:   3'- -GCUGUGGCa--CUU-----------UGCGucuaGGAGAG- -5'
9167 3' -51.8 NC_002512.2 + 151881 0.7 0.962622
Target:  5'- gGGCGCCGgcGAucCGCGGAUCgUUUCc -3'
miRNA:   3'- gCUGUGGCa-CUuuGCGUCUAGgAGAG- -5'
9167 3' -51.8 NC_002512.2 + 94554 0.69 0.974598
Target:  5'- -aGCGCCGUGAucaGCAGGUUCUUg- -3'
miRNA:   3'- gcUGUGGCACUuugCGUCUAGGAGag -5'
9167 3' -51.8 NC_002512.2 + 41561 0.69 0.977095
Target:  5'- -uGCACgGUGgcGCGCAGGUUCUugacCUCg -3'
miRNA:   3'- gcUGUGgCACuuUGCGUCUAGGA----GAG- -5'
9167 3' -51.8 NC_002512.2 + 101868 0.68 0.980918
Target:  5'- uCGACGCCGgggcgGGucuguucugccucgGGCGCG--UCCUCUCg -3'
miRNA:   3'- -GCUGUGGCa----CU--------------UUGCGUcuAGGAGAG- -5'
9167 3' -51.8 NC_002512.2 + 31568 0.68 0.983503
Target:  5'- gGACGCCGUGAAcgGCcuGAUCCUa-- -3'
miRNA:   3'- gCUGUGGCACUUugCGu-CUAGGAgag -5'
9167 3' -51.8 NC_002512.2 + 109739 0.68 0.983503
Target:  5'- ---gGCCG-GuuGCGCGGGUCCUCg- -3'
miRNA:   3'- gcugUGGCaCuuUGCGUCUAGGAGag -5'
9167 3' -51.8 NC_002512.2 + 128266 0.68 0.985304
Target:  5'- cCGACggguccGCCGUc--ACcCAGAUCCUCUCg -3'
miRNA:   3'- -GCUG------UGGCAcuuUGcGUCUAGGAGAG- -5'
9167 3' -51.8 NC_002512.2 + 60564 0.68 0.985981
Target:  5'- ---gGCCGUGGAACGCgAuuucuggcuguacgcGAUCCUCUUc -3'
miRNA:   3'- gcugUGGCACUUUGCG-U---------------CUAGGAGAG- -5'
9167 3' -51.8 NC_002512.2 + 71101 0.7 0.955357
Target:  5'- aCGACGCCccgGGccaccAGCGCcaGGAUCUUCUCg -3'
miRNA:   3'- -GCUGUGGca-CU-----UUGCG--UCUAGGAGAG- -5'
9167 3' -51.8 NC_002512.2 + 13101 0.71 0.94719
Target:  5'- aCGACGCCGUGuucugccuGGCGCucgguaacauGAUCCaCUCg -3'
miRNA:   3'- -GCUGUGGCACu-------UUGCGu---------CUAGGaGAG- -5'
9167 3' -51.8 NC_002512.2 + 81157 0.72 0.911197
Target:  5'- cCGGC-UCGUGggGCGCuu-UCCUCUUg -3'
miRNA:   3'- -GCUGuGGCACuuUGCGucuAGGAGAG- -5'
9167 3' -51.8 NC_002512.2 + 106020 0.78 0.61001
Target:  5'- gCGGCGCCGccgGGggUGCGGcGUCCUCUCc -3'
miRNA:   3'- -GCUGUGGCa--CUuuGCGUC-UAGGAGAG- -5'
9167 3' -51.8 NC_002512.2 + 163331 0.77 0.681377
Target:  5'- aGACACUGUcuGGACGguGGUCCUCUUc -3'
miRNA:   3'- gCUGUGGCAc-UUUGCguCUAGGAGAG- -5'
9167 3' -51.8 NC_002512.2 + 32766 0.75 0.778157
Target:  5'- gGGCGCCGaUGAucucgaaGGCGCAGGacaUCCUCUUg -3'
miRNA:   3'- gCUGUGGC-ACU-------UUGCGUCU---AGGAGAG- -5'
9167 3' -51.8 NC_002512.2 + 140758 0.74 0.823592
Target:  5'- aGACGCCGUGuga-GCAGGcCCUCUa -3'
miRNA:   3'- gCUGUGGCACuuugCGUCUaGGAGAg -5'
9167 3' -51.8 NC_002512.2 + 186243 0.73 0.856131
Target:  5'- gGAC-CCGUGGAACaGCGGAUCCa--- -3'
miRNA:   3'- gCUGuGGCACUUUG-CGUCUAGGagag -5'
9167 3' -51.8 NC_002512.2 + 109095 0.73 0.863022
Target:  5'- uCGACACCGUGGccgucAGCGCcaggcugAGGgucugCCUCUCc -3'
miRNA:   3'- -GCUGUGGCACU-----UUGCG-------UCUa----GGAGAG- -5'
9167 3' -51.8 NC_002512.2 + 140055 0.73 0.870481
Target:  5'- ---gGCCGUGcAGCGCGGucucgacGUCCUCUCg -3'
miRNA:   3'- gcugUGGCACuUUGCGUC-------UAGGAGAG- -5'
9167 3' -51.8 NC_002512.2 + 43022 0.73 0.87844
Target:  5'- aGGCGuuGggcaggucGAGGCGCAGGUCCUCg- -3'
miRNA:   3'- gCUGUggCa-------CUUUGCGUCUAGGAGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.