miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9167 3' -51.8 NC_002512.2 + 55246 1.1 0.010697
Target:  5'- cCGACACCGUGAAACGCAGAUCCUCUCc -3'
miRNA:   3'- -GCUGUGGCACUUUGCGUCUAGGAGAG- -5'
9167 3' -51.8 NC_002512.2 + 82484 0.8 0.519699
Target:  5'- aGACGCCGUuuGACGCcGGUCCUCUg -3'
miRNA:   3'- gCUGUGGCAcuUUGCGuCUAGGAGAg -5'
9167 3' -51.8 NC_002512.2 + 106020 0.78 0.61001
Target:  5'- gCGGCGCCGccgGGggUGCGGcGUCCUCUCc -3'
miRNA:   3'- -GCUGUGGCa--CUuuGCGUC-UAGGAGAG- -5'
9167 3' -51.8 NC_002512.2 + 163331 0.77 0.681377
Target:  5'- aGACACUGUcuGGACGguGGUCCUCUUc -3'
miRNA:   3'- gCUGUGGCAc-UUUGCguCUAGGAGAG- -5'
9167 3' -51.8 NC_002512.2 + 45815 0.76 0.750735
Target:  5'- aCGACACCGUGAugcCGUGGGcuUCgUCUCa -3'
miRNA:   3'- -GCUGUGGCACUuu-GCGUCU--AGgAGAG- -5'
9167 3' -51.8 NC_002512.2 + 32766 0.75 0.778157
Target:  5'- gGGCGCCGaUGAucucgaaGGCGCAGGacaUCCUCUUg -3'
miRNA:   3'- gCUGUGGC-ACU-------UUGCGUCU---AGGAGAG- -5'
9167 3' -51.8 NC_002512.2 + 37753 0.74 0.823592
Target:  5'- aCGACgGCCGcagaacgGAGACGCGGAgggUCCUCUg -3'
miRNA:   3'- -GCUG-UGGCa------CUUUGCGUCU---AGGAGAg -5'
9167 3' -51.8 NC_002512.2 + 140758 0.74 0.823592
Target:  5'- aGACGCCGUGuga-GCAGGcCCUCUa -3'
miRNA:   3'- gCUGUGGCACuuugCGUCUaGGAGAg -5'
9167 3' -51.8 NC_002512.2 + 192483 0.74 0.848282
Target:  5'- uCGACGCgCGgacgGGGACGCgcucgAGGUCUUCUCg -3'
miRNA:   3'- -GCUGUG-GCa---CUUUGCG-----UCUAGGAGAG- -5'
9167 3' -51.8 NC_002512.2 + 186243 0.73 0.856131
Target:  5'- gGAC-CCGUGGAACaGCGGAUCCa--- -3'
miRNA:   3'- gCUGuGGCACUUUG-CGUCUAGGagag -5'
9167 3' -51.8 NC_002512.2 + 92643 0.73 0.856131
Target:  5'- cCGGCGCCG-GGAcccGCGCGGAUCCg--- -3'
miRNA:   3'- -GCUGUGGCaCUU---UGCGUCUAGGagag -5'
9167 3' -51.8 NC_002512.2 + 109095 0.73 0.863022
Target:  5'- uCGACACCGUGGccgucAGCGCcaggcugAGGgucugCCUCUCc -3'
miRNA:   3'- -GCUGUGGCACU-----UUGCG-------UCUa----GGAGAG- -5'
9167 3' -51.8 NC_002512.2 + 140055 0.73 0.870481
Target:  5'- ---gGCCGUGcAGCGCGGucucgacGUCCUCUCg -3'
miRNA:   3'- gcugUGGCACuUUGCGUC-------UAGGAGAG- -5'
9167 3' -51.8 NC_002512.2 + 43022 0.73 0.87844
Target:  5'- aGGCGuuGggcaggucGAGGCGCAGGUCCUCg- -3'
miRNA:   3'- gCUGUggCa-------CUUUGCGUCUAGGAGag -5'
9167 3' -51.8 NC_002512.2 + 87716 0.72 0.898783
Target:  5'- aGACGCCGcGAGACGgc--UCCUCUCg -3'
miRNA:   3'- gCUGUGGCaCUUUGCgucuAGGAGAG- -5'
9167 3' -51.8 NC_002512.2 + 155815 0.72 0.905107
Target:  5'- gGAgGCCGUGuccgUGCAGAUCCgCUCc -3'
miRNA:   3'- gCUgUGGCACuuu-GCGUCUAGGaGAG- -5'
9167 3' -51.8 NC_002512.2 + 81157 0.72 0.911197
Target:  5'- cCGGC-UCGUGggGCGCuu-UCCUCUUg -3'
miRNA:   3'- -GCUGuGGCACuuUGCGucuAGGAGAG- -5'
9167 3' -51.8 NC_002512.2 + 75542 0.72 0.917052
Target:  5'- uCGACGCCGUGGcggaggacgacGACGCGGAcgacUCCggaUCc -3'
miRNA:   3'- -GCUGUGGCACU-----------UUGCGUCU----AGGag-AG- -5'
9167 3' -51.8 NC_002512.2 + 155378 0.72 0.917052
Target:  5'- gCGGgACCGcGAGGCugGCgAGGUCCUCUCc -3'
miRNA:   3'- -GCUgUGGCaCUUUG--CG-UCUAGGAGAG- -5'
9167 3' -51.8 NC_002512.2 + 95798 0.71 0.938092
Target:  5'- aGGCGCCGg--GGCGCGGAUCCg--- -3'
miRNA:   3'- gCUGUGGCacuUUGCGUCUAGGagag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.