miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9167 3' -51.8 NC_002512.2 + 191409 0.66 0.997656
Target:  5'- gGACACCa-GGAugGCAGcAUCCgCUUu -3'
miRNA:   3'- gCUGUGGcaCUUugCGUC-UAGGaGAG- -5'
9167 3' -51.8 NC_002512.2 + 99450 0.66 0.996696
Target:  5'- aCGACcuggaagGCC-UGGAugGCGGucuUCCUCUUc -3'
miRNA:   3'- -GCUG-------UGGcACUUugCGUCu--AGGAGAG- -5'
9167 3' -51.8 NC_002512.2 + 36758 0.66 0.996748
Target:  5'- gGACgACCGUGAcgucgggccgGACGCAG---CUCUCc -3'
miRNA:   3'- gCUG-UGGCACU----------UUGCGUCuagGAGAG- -5'
9167 3' -51.8 NC_002512.2 + 95666 0.66 0.997656
Target:  5'- -aACGCCGUGggGCuGUAGGgggCCUUcaggUCg -3'
miRNA:   3'- gcUGUGGCACuuUG-CGUCUa--GGAG----AG- -5'
9167 3' -51.8 NC_002512.2 + 126494 0.66 0.997656
Target:  5'- uCGugGCCccGGAGCGCgAGcgCCUCg- -3'
miRNA:   3'- -GCugUGGcaCUUUGCG-UCuaGGAGag -5'
9167 3' -51.8 NC_002512.2 + 194336 0.66 0.997656
Target:  5'- aCGGUugCGUGGucGCGCacgagggagGGGUCCUCUUc -3'
miRNA:   3'- -GCUGugGCACUu-UGCG---------UCUAGGAGAG- -5'
9167 3' -51.8 NC_002512.2 + 219878 0.66 0.997656
Target:  5'- aCGAgGCCGgggucgGAGACGagccGAccgcccUCCUCUCg -3'
miRNA:   3'- -GCUgUGGCa-----CUUUGCgu--CU------AGGAGAG- -5'
9167 3' -51.8 NC_002512.2 + 158926 0.66 0.997656
Target:  5'- aCGGCuuCGgcgGggGCGCcGGcggCCUCUCg -3'
miRNA:   3'- -GCUGugGCa--CuuUGCGuCUa--GGAGAG- -5'
9167 3' -51.8 NC_002512.2 + 120758 0.66 0.997656
Target:  5'- aCGugGCCuGgaagGAGAgGCAGAcCCUCa- -3'
miRNA:   3'- -GCugUGG-Ca---CUUUgCGUCUaGGAGag -5'
9167 3' -51.8 NC_002512.2 + 102555 0.66 0.996195
Target:  5'- cCGACugCGUGuauuugagcaaGGACGCccuGGucuccAUCCUCUCc -3'
miRNA:   3'- -GCUGugGCAC-----------UUUGCG---UC-----UAGGAGAG- -5'
9167 3' -51.8 NC_002512.2 + 41140 0.66 0.996195
Target:  5'- gGACACCaUGAAACuGguGAUCUugugcugCUCg -3'
miRNA:   3'- gCUGUGGcACUUUG-CguCUAGGa------GAG- -5'
9167 3' -51.8 NC_002512.2 + 8748 0.66 0.995568
Target:  5'- uCGACGaCG-GGGACGCGG-UCCUCa- -3'
miRNA:   3'- -GCUGUgGCaCUUUGCGUCuAGGAGag -5'
9167 3' -51.8 NC_002512.2 + 134687 0.66 0.997232
Target:  5'- gGACGCgCGac---CGCGGAcgUCCUCUCg -3'
miRNA:   3'- gCUGUG-GCacuuuGCGUCU--AGGAGAG- -5'
9167 3' -51.8 NC_002512.2 + 80033 0.66 0.997232
Target:  5'- gGAC-CCGUGAAAa--AGAUCCccaUCUCc -3'
miRNA:   3'- gCUGuGGCACUUUgcgUCUAGG---AGAG- -5'
9167 3' -51.8 NC_002512.2 + 92712 0.66 0.997232
Target:  5'- aCGACGCCGUacggacguccggGggGCGCGcucGGUCCg--- -3'
miRNA:   3'- -GCUGUGGCA------------CuuUGCGU---CUAGGagag -5'
9167 3' -51.8 NC_002512.2 + 112311 0.66 0.997232
Target:  5'- uCGAUGCCGgu-GACGUAGGUCagCUCc -3'
miRNA:   3'- -GCUGUGGCacuUUGCGUCUAGgaGAG- -5'
9167 3' -51.8 NC_002512.2 + 152497 0.66 0.995568
Target:  5'- aCGGCGCCacggGUGGAGCGUuccgGGGUCggggUCUCg -3'
miRNA:   3'- -GCUGUGG----CACUUUGCG----UCUAGg---AGAG- -5'
9167 3' -51.8 NC_002512.2 + 188126 0.66 0.995568
Target:  5'- aGACGCUGUcGAcAUGguGuucCCUCUCa -3'
miRNA:   3'- gCUGUGGCA-CUuUGCguCua-GGAGAG- -5'
9167 3' -51.8 NC_002512.2 + 58810 0.66 0.995568
Target:  5'- uGACgGCCGUGAAGaGCcucAUCUUCUCg -3'
miRNA:   3'- gCUG-UGGCACUUUgCGuc-UAGGAGAG- -5'
9167 3' -51.8 NC_002512.2 + 119566 0.66 0.997656
Target:  5'- gGGCggACCGcgGGAGCccgGCGGGUCCcCUCg -3'
miRNA:   3'- gCUG--UGGCa-CUUUG---CGUCUAGGaGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.