miRNA display CGI


Results 41 - 60 of 84 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9167 3' -51.8 NC_002512.2 + 223315 0.68 0.985304
Target:  5'- uCGACACCGUGAacggucgggagGACG-GGAcCCUCa- -3'
miRNA:   3'- -GCUGUGGCACU-----------UUGCgUCUaGGAGag -5'
9167 3' -51.8 NC_002512.2 + 220111 0.68 0.986951
Target:  5'- aGGCGuCCGUGAGccgccacgcgggGCgGCGGGUCCggCUCc -3'
miRNA:   3'- gCUGU-GGCACUU------------UG-CGUCUAGGa-GAG- -5'
9167 3' -51.8 NC_002512.2 + 191810 0.68 0.988453
Target:  5'- gGACACCGggcacUGAcGCGCgcgGGGUCCUUg- -3'
miRNA:   3'- gCUGUGGC-----ACUuUGCG---UCUAGGAGag -5'
9167 3' -51.8 NC_002512.2 + 105870 0.68 0.988453
Target:  5'- gGACGCa--GgcGCGCGGGUCCgUCUCc -3'
miRNA:   3'- gCUGUGgcaCuuUGCGUCUAGG-AGAG- -5'
9167 3' -51.8 NC_002512.2 + 221838 0.68 0.988453
Target:  5'- cCGAC-CCGcgGggGCGCcucgggaccgGGA-CCUCUCg -3'
miRNA:   3'- -GCUGuGGCa-CuuUGCG----------UCUaGGAGAG- -5'
9167 3' -51.8 NC_002512.2 + 119184 0.67 0.989816
Target:  5'- aCGACGCuCGUGGAccuGCGCAacGUCUgcaUCUCg -3'
miRNA:   3'- -GCUGUG-GCACUU---UGCGUc-UAGG---AGAG- -5'
9167 3' -51.8 NC_002512.2 + 184204 0.67 0.991051
Target:  5'- uGACuCCccGGAcCGCGGGUUCUCUCu -3'
miRNA:   3'- gCUGuGGcaCUUuGCGUCUAGGAGAG- -5'
9167 3' -51.8 NC_002512.2 + 125022 0.67 0.991051
Target:  5'- uCGGCGCCGcccgcuGCGCgAGGUCC-CUCc -3'
miRNA:   3'- -GCUGUGGCacuu--UGCG-UCUAGGaGAG- -5'
9167 3' -51.8 NC_002512.2 + 181066 0.67 0.992164
Target:  5'- -uGCGCCGcGAAccuccuCGC-GAUCCUCUCc -3'
miRNA:   3'- gcUGUGGCaCUUu-----GCGuCUAGGAGAG- -5'
9167 3' -51.8 NC_002512.2 + 220054 0.69 0.974598
Target:  5'- uCGACAuggcuccgcCCGaGAcucuGGCGCGGAUCCUCa- -3'
miRNA:   3'- -GCUGU---------GGCaCU----UUGCGUCUAGGAGag -5'
9167 3' -51.8 NC_002512.2 + 176081 0.71 0.942759
Target:  5'- cCGACACCucGGAGCGCAGcgCCUg-- -3'
miRNA:   3'- -GCUGUGGcaCUUUGCGUCuaGGAgag -5'
9167 3' -51.8 NC_002512.2 + 95798 0.71 0.938092
Target:  5'- aGGCGCCGg--GGCGCGGAUCCg--- -3'
miRNA:   3'- gCUGUGGCacuUUGCGUCUAGGagag -5'
9167 3' -51.8 NC_002512.2 + 75542 0.72 0.917052
Target:  5'- uCGACGCCGUGGcggaggacgacGACGCGGAcgacUCCggaUCc -3'
miRNA:   3'- -GCUGUGGCACU-----------UUGCGUCU----AGGag-AG- -5'
9167 3' -51.8 NC_002512.2 + 155378 0.72 0.917052
Target:  5'- gCGGgACCGcGAGGCugGCgAGGUCCUCUCc -3'
miRNA:   3'- -GCUgUGGCaCUUUG--CG-UCUAGGAGAG- -5'
9167 3' -51.8 NC_002512.2 + 155815 0.72 0.905107
Target:  5'- gGAgGCCGUGuccgUGCAGAUCCgCUCc -3'
miRNA:   3'- gCUgUGGCACuuu-GCGUCUAGGaGAG- -5'
9167 3' -51.8 NC_002512.2 + 87716 0.72 0.898783
Target:  5'- aGACGCCGcGAGACGgc--UCCUCUCg -3'
miRNA:   3'- gCUGUGGCaCUUUGCgucuAGGAGAG- -5'
9167 3' -51.8 NC_002512.2 + 92643 0.73 0.856131
Target:  5'- cCGGCGCCG-GGAcccGCGCGGAUCCg--- -3'
miRNA:   3'- -GCUGUGGCaCUU---UGCGUCUAGGagag -5'
9167 3' -51.8 NC_002512.2 + 192483 0.74 0.848282
Target:  5'- uCGACGCgCGgacgGGGACGCgcucgAGGUCUUCUCg -3'
miRNA:   3'- -GCUGUG-GCa---CUUUGCG-----UCUAGGAGAG- -5'
9167 3' -51.8 NC_002512.2 + 37753 0.74 0.823592
Target:  5'- aCGACgGCCGcagaacgGAGACGCGGAgggUCCUCUg -3'
miRNA:   3'- -GCUG-UGGCa------CUUUGCGUCU---AGGAGAg -5'
9167 3' -51.8 NC_002512.2 + 45815 0.76 0.750735
Target:  5'- aCGACACCGUGAugcCGUGGGcuUCgUCUCa -3'
miRNA:   3'- -GCUGUGGCACUuu-GCGUCU--AGgAGAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.